Gene Page: OMD

Summary ?
GeneID4958
SymbolOMD
SynonymsOSAD|SLRR2C
Descriptionosteomodulin
ReferenceHGNC:HGNC:8134|Ensembl:ENSG00000127083|HPRD:10128|Vega:OTTHUMG00000020225
Gene typeprotein-coding
Map location9q22.31
Pascal p-value0.08
Fetal beta-0.865
eGeneMyers' cis & trans

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS
PMID:cooccurHigh-throughput literature-searchSystematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included.
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: schizophrenia,schizophrenic,schizophreniasClick to show details

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs17131472chr191962966OMD49580.01trans
rs546975chr191963738OMD49580.02trans
rs6761668chr216545352OMD49580.11trans
rs17535450chr239900012OMD49580.05trans
rs6710894chr266876700OMD49580.05trans
rs17821815chr2119018522OMD49580.09trans
rs17616252chr2167976691OMD49580.02trans
rs11706314chr345309716OMD49580.01trans
rs11706394chr345309907OMD49580.02trans
rs1691463chr384914366OMD49580.01trans
rs9288980chr3112964991OMD49580.2trans
rs3995908chr3112998529OMD49580.2trans
rs7652801chr3113008605OMD49580.2trans
rs2922180chr3125280472OMD49586.383E-5trans
rs2976809chr3125451738OMD49588.238E-4trans
rs9917710chr3176280218OMD49580.17trans
rs16889842chr49872012OMD49580.12trans
rs7668550chr4104384355OMD49580.09trans
rs3796892chr4111404774OMD49580.13trans
rs313946chr4113975904OMD49580.01trans
rs657141chr4113981041OMD49580.01trans
rs10050805chr530805352OMD49580.04trans
rs10041298chr552214802OMD49580.19trans
rs16894149chr561013724OMD49580.07trans
rs6449550chr561034312OMD49580.01trans
rs2080945chr5129100423OMD49580.01trans
rs6874540chr5149911669OMD49580.08trans
rs2273232chr5149912526OMD49580.08trans
rs17056435chr5158453782OMD49580.01trans
rs9313797chr5158465457OMD49580.15trans
rs17056474chr5158468105OMD49580.15trans
rs17135501chr62704474OMD49580.19trans
rs17135521chr62707631OMD49580.19trans
snp_a-17879260OMD49580.19trans
rs2294262chr616108966OMD49580.06trans
rs4236095chr647368686OMD49580.12trans
rs6920042chr667907570OMD49580.02trans
rs6939897chr667913123OMD49580.03trans
rs6455226chr667930295OMD49583.897E-4trans
rs17156987chr728704217OMD49580.06trans
snp_a-22666570OMD49580.02trans
rs2430483chr7104548631OMD49580.02trans
rs3823550chr7137346101OMD49580.08trans
rs2199402chr89201002OMD49580.01trans
rs2169384chr89216985OMD49580.13trans
rs7841407chr89243427OMD49580.01trans
rs2253777chr993467893OMD49580.09trans
rs2061799chr997795003OMD49580.13trans
rs1999431chr9107564675OMD49580.1trans
rs998410chr9117622673OMD49580.04trans
rs9423711chr102574802OMD49584.351E-4trans
rs748375chr1033440178OMD49580.17trans
rs4514358chr1043861923OMD49585.209E-4trans
rs11820030chr1176133564OMD49580.04trans
rs17134872chr1176139845OMD49580.01trans
rs107512550OMD49580.01trans
rs11236774chr1176234952OMD49580.01trans
rs10502229chr11117979969OMD49580.11trans
rs11216779chr11118002371OMD49580.19trans
rs10879027chr1270237156OMD49580.01trans
rs11112163chr12105072508OMD49580.01trans
rs9551590chr1329589464OMD49580.12trans
rs4942043chr1341978218OMD49580.19trans
rs1750009chr1342657093OMD49580.19trans
rs9529974chr1372821935OMD49580.01trans
rs17720221chr1375182377OMD49580.07trans
rs11840833chr1394378306OMD49580.06trans
rs17657985chr13100499573OMD49580.14trans
rs10142086chr1435135892OMD49580.13trans
rs1951867chr1454407191OMD49580.14trans
rs1457420chr1466958675OMD49580.15trans
rs12880065chr1470747905OMD49580.13trans
rs10149864chr1486719683OMD49580trans
rs2093759chr1497171024OMD49580.02trans
rs17244419chr1497171074OMD49580trans
rs7177212chr1534425413OMD49580.14trans
rs305050chr1570089797OMD49580.08trans
rs11073814chr1589378883OMD49580.1trans
rs7165622chr1593979910OMD49580.1trans
rs17294918chr1652717122OMD49580.13trans
rs17841422chr1720969134OMD49580.07trans
rs7242943chr1837499379OMD49580.16trans
rs7236407chr1847827597OMD49580.19trans
rs4987765chr1860905021OMD49580.01trans
rs11873703chr1861448702OMD49581.299E-5trans
rs6095741chr2048666589OMD49581.86E-5trans
rs6000401chr2237149335OMD49580.13trans
rs5991662chrX43335796OMD49586.137E-4trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
REACTOME KERATAN SULFATE BIOSYNTHESIS 2618All SZGR 2.0 genes in this pathway
REACTOME KERATAN SULFATE KERATIN METABOLISM 3021All SZGR 2.0 genes in this pathway
REACTOME KERATAN SULFATE DEGRADATION 117All SZGR 2.0 genes in this pathway
REACTOME GLYCOSAMINOGLYCAN METABOLISM 11169All SZGR 2.0 genes in this pathway
REACTOME METABOLISM OF CARBOHYDRATES 247154All SZGR 2.0 genes in this pathway
THUM SYSTOLIC HEART FAILURE UP 423283All SZGR 2.0 genes in this pathway
VECCHI GASTRIC CANCER EARLY DN 367220All SZGR 2.0 genes in this pathway
NADERI BREAST CANCER PROGNOSIS DN 1813All SZGR 2.0 genes in this pathway
GAUSSMANN MLL AF4 FUSION TARGETS B UP 2616All SZGR 2.0 genes in this pathway
BEGUM TARGETS OF PAX3 FOXO1 FUSION UP 6045All SZGR 2.0 genes in this pathway
INGRAM SHH TARGETS UP 12779All SZGR 2.0 genes in this pathway
BERTUCCI INVASIVE CARCINOMA DUCTAL VS LOBULAR DN 4634All SZGR 2.0 genes in this pathway
RICKMAN HEAD AND NECK CANCER B 4822All SZGR 2.0 genes in this pathway
BYSTRYKH HEMATOPOIESIS STEM CELL QTL TRANS 882572All SZGR 2.0 genes in this pathway
KRASNOSELSKAYA ILF3 TARGETS UP 3824All SZGR 2.0 genes in this pathway
XU GH1 AUTOCRINE TARGETS UP 268157All SZGR 2.0 genes in this pathway
BROWNE HCMV INFECTION 6HR UP 7148All SZGR 2.0 genes in this pathway
SMID BREAST CANCER LUMINAL A UP 8452All SZGR 2.0 genes in this pathway
SMID BREAST CANCER BASAL DN 701446All SZGR 2.0 genes in this pathway
BOCHKIS FOXA2 TARGETS 425261All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL UP 260174All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL CULTURED VS FRESH UP 425298All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL CULTURED VS FRESH DN 3125All SZGR 2.0 genes in this pathway
WEST ADRENOCORTICAL TUMOR DN 546362All SZGR 2.0 genes in this pathway
GRESHOCK CANCER COPY NUMBER UP 323240All SZGR 2.0 genes in this pathway
SWEET LUNG CANCER KRAS DN 435289All SZGR 2.0 genes in this pathway
YAGI AML WITH INV 16 TRANSLOCATION 422277All SZGR 2.0 genes in this pathway
WANG MLL TARGETS 289188All SZGR 2.0 genes in this pathway
NABA PROTEOGLYCANS 3523All SZGR 2.0 genes in this pathway
NABA CORE MATRISOME 275148All SZGR 2.0 genes in this pathway
NABA MATRISOME 1028559All SZGR 2.0 genes in this pathway