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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: A2BP1

Summary

GeneID

54715

Symbol

A2BP1

Synonyms

FOX1|HRNBP1

Description

ataxin 2-binding protein 1

Locus tag

Gene type

protein-coding

Map location

16p13.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Expression

P value: 1.936

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0033

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000166

nucleotide binding

IEA

GO:0003723

RNA binding

NAS

10814712

GO:0008022

protein C-terminus binding

IPI

10814712

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006397

mRNA processing

IEA

GO:0008380

RNA splicing

IEA

GO:0050658

RNA transport

NAS

10814712

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005802

trans-Golgi network

IDA

10814712

GO:0005634

nucleus

IEA

GO:0005737

cytoplasm

IDA

10814712

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
ATXN2	ATX2 \| FLJ46772 \| SCA2 \| TNRC13	ataxin 2	-	HPRD	11471052

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_DN	463	290	All SZGR genes in this pathway
TAKADA_GASTRIC_CANCER_COPY_NUMBER_DN	29	15	All SZGR genes in this pathway
XU_GH1_AUTOCRINE_TARGETS_UP	268	157	All SZGR genes in this pathway
XU_GH1_AUTOCRINE_TARGETS_DN	142	94	All SZGR genes in this pathway
CAMPS_COLON_CANCER_COPY_NUMBER_DN	74	34	All SZGR genes in this pathway
ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_DN	228	114	All SZGR genes in this pathway
ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN	940	425	All SZGR genes in this pathway
YAUCH_HEDGEHOG_SIGNALING_PARACRINE_DN	264	159	All SZGR genes in this pathway
MEISSNER_NPC_HCP_WITH_H3K4ME2	491	319	All SZGR genes in this pathway
MIKKELSEN_MEF_HCP_WITH_H3_UNMETHYLATED	228	119	All SZGR genes in this pathway
IKEDA_MIR1_TARGETS_DN	7	7	All SZGR genes in this pathway
IKEDA_MIR30_TARGETS_DN	27	24	All SZGR genes in this pathway
SERVITJA_ISLET_HNF1A_TARGETS_UP	163	111	All SZGR genes in this pathway
PLASARI_TGFB1_TARGETS_10HR_UP	199	143	All SZGR genes in this pathway
ACEVEDO_FGFR1_TARGETS_IN_PROSTATE_CANCER_MODEL_DN	308	187	All SZGR genes in this pathway
ZWANG_EGF_PERSISTENTLY_UP	32	24	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	154	160	1A	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-1/206	661	667	1A	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-129-5p	870	876	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
miR-129-5p	870	876	1A	hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-132/212	1003	1009	1A	hsa-miR-212^SZ	UAACAGUCUCCAGUCACGGCC
miR-132/212	1003	1009	1A	hsa-miR-132^brain	UAACAGUCUACAGCCAUGGUCG
miR-186	897	903	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-186	897	903	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-217	72	79	1A,m8	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-27	1596	1602	1A	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	1596	1602	1A	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-299-5p	1723	1729	1A	hsa-miR-299-5p	UGGUUUACCGUCCCACAUACAU
miR-30-5p	1422	1429	1A,m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-320	1674	1680	m8	hsa-miR-320	AAAAGCUGGGUUGAGAGGGCGAA
miR-328	290	296	m8	hsa-miR-328^brain	CUGGCCCUCUCUGCCCUUCCGU
miR-328	290	296	m8	hsa-miR-328^brain	CUGGCCCUCUCUGCCCUUCCGU
miR-496	315	321	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-7	1460	1466	m8	hsa-miR-7^SZ	UGGAAGACUAGUGAUUUUGUUG
miR-7	1460	1466	m8	hsa-miR-7^SZ	UGGAAGACUAGUGAUUUUGUUG

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.