SZGR2

Summary ?

GeneID	79136
Symbol	LY6G6E
Synonyms	C6orf22\|G6e
Description	lymphocyte antigen 6 complex, locus G6E (pseudogene)
Reference	MIM:610437\|HGNC:HGNC:13934\|HPRD:14330\|
Gene type	pseudo
Map location	6p21.3
Pascal p-value	1E-12

Gene in Data Sources

Gene set name	Method of gene set	Description	Info
CV:PGCnp	Genome-wide Association Study	GWAS

Section I. Genetics and epigenetics annotation

Section II. Transcriptome annotation

General gene expression (GTEx)

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

Top co-expressed genes in brain regions

Top 10 positively co-expressed genes
Gene	Pearson's Correlation	Spearman's Correlation
LRRC62	0.46	0.58
KCNN2	0.45	0.50
GRIK5	0.44	0.57
MED15	0.43	0.56
WNK2	0.43	0.56
CPT1C	0.43	0.56
CTNND2	0.43	0.50
DLGAP4	0.43	0.54
FRMPD3	0.43	0.53
BRSK2	0.43	0.56

Top 10 negatively co-expressed genes
Gene	Pearson's Correlation	Spearman's Correlation
AF347015.21	-0.38	-0.51
GNG11	-0.37	-0.52
MT-CO2	-0.36	-0.47
NOSTRIN	-0.36	-0.48
HIGD1B	-0.36	-0.50
GIMAP5	-0.36	-0.46
C1orf54	-0.35	-0.49
AF347015.8	-0.34	-0.45
AF347015.31	-0.34	-0.45
PLA2G5	-0.34	-0.48

Section V. Pathway annotation