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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: CABP1

Summary

GeneID

9478

Symbol

CABP1

Synonyms

CALBRAIN|HCALB_BR

Description

calcium binding protein 1

Locus tag

Gene type

protein-coding

Map location

12q24.31

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005509

calcium ion binding

IEA

GO:0005509

calcium ion binding

TAS

9920909

GO:0004857

enzyme inhibitor activity

TAS

9920909

GO:0048306

calcium-dependent protein binding

IPI

15980432

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0014069

postsynaptic density

IDA

Synap (GO term level: 10)

15140941

GO:0005856

cytoskeleton

IEA

GO:0005737

cytoplasm

IEA

GO:0005886

plasma membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CACNA1A	APCA \| CACNL1A4 \| CAV2.1 \| EA2 \| FHM \| HPCA \| MHP \| MHP1 \| SCA6	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	-	HPRD,BioGRID	11865310 \|14570872
CACNA1C	CACH2 \| CACN2 \| CACNL1A1 \| CCHL1A1 \| CaV1.2 \| MGC120730 \| TS	calcium channel, voltage-dependent, L type, alpha 1C subunit	-	HPRD,BioGRID	15140941
ITPR1	INSP3R1 \| IP3R \| IP3R1 \| SCA15 \| SCA16	inositol 1,4,5-triphosphate receptor, type 1	Affinity Capture-Western in vitro in vivo Reconstituted Complex	BioGRID	12032348 \|14685260
ITPR3	FLJ36205 \| IP3R \| IP3R3	inositol 1,4,5-triphosphate receptor, type 3	-	HPRD,BioGRID	12032348 \|14685260
PPP3R1	CALNB1 \| CNB \| CNB1	protein phosphatase 3 (formerly 2B), regulatory subunit B, alpha isoform	Reconstituted Complex	BioGRID	11108966

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM5	94	59	All SZGR genes in this pathway
KANG_IMMORTALIZED_BY_TERT_UP	89	61	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN	1237	837	All SZGR genes in this pathway
SATO_SILENCED_BY_METHYLATION_IN_PANCREATIC_CANCER_1	419	273	All SZGR genes in this pathway
MARSON_BOUND_BY_FOXP3_STIMULATED	1022	619	All SZGR genes in this pathway
MARSON_BOUND_BY_FOXP3_UNSTIMULATED	1229	713	All SZGR genes in this pathway
SAGIV_CD24_TARGETS_UP	23	15	All SZGR genes in this pathway
SAGIV_CD24_TARGETS_DN	46	26	All SZGR genes in this pathway
KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP	756	494	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_VIA_TP53_GROUP_D	280	158	All SZGR genes in this pathway
VANDESLUIS_NORMAL_EMBRYOS_DN	25	13	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-128	163	170	1A,m8	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
miR-128	163	170	1A,m8	hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-145	186	193	1A,m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-27	164	171	1A,m8	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	164	171	1A,m8	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-96	225	231	m8	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.