Summary ?
GeneID116028
SymbolRMI2
SynonymsBLAP18|C16orf75
DescriptionRecQ mediated genome instability 2
ReferenceMIM:612426|HGNC:HGNC:28349|Ensembl:ENSG00000175643|HPRD:14497|Vega:OTTHUMG00000129793
Gene typeprotein-coding
Map location16p13.13
Pascal p-value0.665
eGeneAnterior cingulate cortex BA24
Caudate basal ganglia
Cerebellar Hemisphere
Cerebellum
Cortex
Frontal Cortex BA9
Hippocampus
Hypothalamus
Nucleus accumbens basal ganglia
Putamen basal ganglia

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS
CV:PheWASPhenome-wide association studies (PheWAS)157 SNPs associated with schizophrenia 0

Section I. Genetics and epigenetics annotation

@CV:PheWAS

SNP IDChromosomePositionAllelePFunctionGeneUp/Down Distance

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs171591chr1611288934C16orf751160280.08cis
rs168716chr1611309750C16orf751160280.05cis
rs149311chr1611345753C16orf751160280.07cis
rs243327chr1611353303C16orf751160286.167E-12cis
rs243325chr1611354496C16orf751160280cis
rs416603chr1611364078C16orf751160285.025E-9cis
rs431918chr1611365415C16orf751160280.01cis
rs1559394chr1611369204C16orf751160280cis
rs4451969chr1611383518C16orf751160280.15cis
rs11640295chr1611390727C16orf751160287.259E-4cis
rs1874021chr1611391189C16orf751160281.009E-5cis
rs12927773chr1611403962C16orf751160280cis
rs2867945chr1611406017C16orf751160280.01cis
rs6498184chr1611435989C16orf751160280.01cis
rs243327chr1611353303C16orf751160281.554E-9trans
rs243325chr1611354496C16orf751160280.12trans
rs416603chr1611364078C16orf751160281.232E-6trans
rs1559394chr1611369204C16orf751160280.1trans
rs11640295chr1611390727C16orf751160280.05trans
rs1874021chr1611391189C16orf751160280trans
rs12927773chr1611403962C16orf751160280.19trans
rs2433291611352313RMI2ENSG00000175643.71.224E-608807gtex_brain_ba24
rs2433271611353304RMI2ENSG00000175643.71.227E-609798gtex_brain_ba24
rs2433241611354970RMI2ENSG00000175643.71.225E-6011464gtex_brain_ba24
rs116401381611362729RMI2ENSG00000175643.71.498E-6019223gtex_brain_ba24
rs71915381611363389RMI2ENSG00000175643.71.671E-6019883gtex_brain_ba24
rs116441841611365104RMI2ENSG00000175643.71.499E-6021598gtex_brain_ba24
rs23011271611367477RMI2ENSG00000175643.72.795E-7023971gtex_brain_ba24
rs2433141611385104RMI2ENSG00000175643.71.432E-8041598gtex_brain_ba24
rs1714701611385964RMI2ENSG00000175643.73.866E-8042458gtex_brain_ba24
rs71892391611402515RMI2ENSG00000175643.71.642E-8059009gtex_brain_ba24
rs71917001611406803RMI2ENSG00000175643.71.068E-7063297gtex_brain_ba24
rs123254951611418328RMI2ENSG00000175643.79.204E-12074822gtex_brain_ba24
rs125978931611426331RMI2ENSG00000175643.74.324E-12082825gtex_brain_ba24
rs285020091611426541RMI2ENSG00000175643.72.757E-8083035gtex_brain_ba24
rs133342031611428538RMI2ENSG00000175643.72.346E-8085032gtex_brain_ba24
rs127087221611428905RMI2ENSG00000175643.72.344E-8085399gtex_brain_ba24
rs101634101611430615RMI2ENSG00000175643.72.019E-8087109gtex_brain_ba24
rs71877411611433103RMI2ENSG00000175643.74.598E-12089597gtex_brain_ba24
rs121491601611439303RMI2ENSG00000175643.71.433E-12095797gtex_brain_ba24
rs9187381611439679RMI2ENSG00000175643.73.761E-11096173gtex_brain_ba24
rs1523031611308099RMI2ENSG00000175643.74.623E-70-35407gtex_brain_putamen_basal
rs16460721611324799RMI2ENSG00000175643.75.032E-80-18707gtex_brain_putamen_basal
rs16409261611324843RMI2ENSG00000175643.71.224E-80-18663gtex_brain_putamen_basal
rs16460731611325215RMI2ENSG00000175643.71.205E-80-18291gtex_brain_putamen_basal
rs1495971611343942RMI2ENSG00000175643.72.28E-100436gtex_brain_putamen_basal
rs129291121611346008RMI2ENSG00000175643.77.725E-902502gtex_brain_putamen_basal
rs169581751611347199RMI2ENSG00000175643.71.535E-803693gtex_brain_putamen_basal
rs339328991611348211RMI2ENSG00000175643.74.778E-904705gtex_brain_putamen_basal
rs339777061611350155RMI2ENSG00000175643.71.691E-906649gtex_brain_putamen_basal
rs2433301611350991RMI2ENSG00000175643.71.162E-1107485gtex_brain_putamen_basal
rs2433291611352313RMI2ENSG00000175643.72.471E-1108807gtex_brain_putamen_basal
rs620235941611352930RMI2ENSG00000175643.71.551E-909424gtex_brain_putamen_basal
rs2433271611353304RMI2ENSG00000175643.79.054E-1209798gtex_brain_putamen_basal
rs15593921611354820RMI2ENSG00000175643.71.55E-9011314gtex_brain_putamen_basal
rs2433241611354970RMI2ENSG00000175643.72.471E-11011464gtex_brain_putamen_basal
rs71951831611355273RMI2ENSG00000175643.77.974E-11011767gtex_brain_putamen_basal
rs71966941611355364RMI2ENSG00000175643.71.559E-9011858gtex_brain_putamen_basal
rs1714711611355450RMI2ENSG00000175643.72.433E-11011944gtex_brain_putamen_basal
rs711366341611358035RMI2ENSG00000175643.74.759E-9014529gtex_brain_putamen_basal
rs129237561611359675RMI2ENSG00000175643.73.507E-11016169gtex_brain_putamen_basal
rs4421541611359852RMI2ENSG00000175643.72.441E-11016346gtex_brain_putamen_basal
rs2433191611359929RMI2ENSG00000175643.72.442E-11016423gtex_brain_putamen_basal
rs567395171611360607RMI2ENSG00000175643.71.492E-10017101gtex_brain_putamen_basal
rs80539771611360701RMI2ENSG00000175643.71.775E-9017195gtex_brain_putamen_basal
rs80589831611360849RMI2ENSG00000175643.77.78E-12017343gtex_brain_putamen_basal
rs714062211611361533RMI2ENSG00000175643.71.661E-10018027gtex_brain_putamen_basal
rs80436251611361895RMI2ENSG00000175643.78.19E-12018389gtex_brain_putamen_basal
rs116401381611362729RMI2ENSG00000175643.72.517E-11019223gtex_brain_putamen_basal
rs71915381611363389RMI2ENSG00000175643.71.895E-11019883gtex_brain_putamen_basal
rs4155951611363692RMI2ENSG00000175643.73.984E-11020186gtex_brain_putamen_basal
rs4166031611364079RMI2ENSG00000175643.73.984E-11020573gtex_brain_putamen_basal
rs116441841611365104RMI2ENSG00000175643.72.972E-11021598gtex_brain_putamen_basal
rs355983561611367195RMI2ENSG00000175643.73.542E-7023689gtex_brain_putamen_basal
rs23011271611367477RMI2ENSG00000175643.77.473E-9023971gtex_brain_putamen_basal
rs124474501611368187RMI2ENSG00000175643.75.518E-9024681gtex_brain_putamen_basal
rs116417151611371279RMI2ENSG00000175643.75.726E-9027773gtex_brain_putamen_basal
rs116455921611371310RMI2ENSG00000175643.75.728E-9027804gtex_brain_putamen_basal
rs116446261611373336RMI2ENSG00000175643.75.816E-9029830gtex_brain_putamen_basal
rs23013651611375286RMI2ENSG00000175643.73.4E-9031780gtex_brain_putamen_basal
rs360564141611375807RMI2ENSG00000175643.75.816E-9032301gtex_brain_putamen_basal
rs129300051611376740RMI2ENSG00000175643.75.816E-9033234gtex_brain_putamen_basal
rs3978554751611381336RMI2ENSG00000175643.73.935E-9037830gtex_brain_putamen_basal
rs2433141611385104RMI2ENSG00000175643.71.287E-9041598gtex_brain_putamen_basal
rs116479721611385329RMI2ENSG00000175643.72.17E-9041823gtex_brain_putamen_basal
rs1714701611385964RMI2ENSG00000175643.71.189E-9042458gtex_brain_putamen_basal
rs341656481611387129RMI2ENSG00000175643.72.217E-9043623gtex_brain_putamen_basal
rs3983641611387164RMI2ENSG00000175643.71.556E-7043658gtex_brain_putamen_basal
rs18740211611391190RMI2ENSG00000175643.76.047E-9047684gtex_brain_putamen_basal
rs80574171611392772RMI2ENSG00000175643.71.556E-7049266gtex_brain_putamen_basal
rs116407881611393081RMI2ENSG00000175643.72.217E-9049575gtex_brain_putamen_basal
rs116465341611397083RMI2ENSG00000175643.72.217E-9053577gtex_brain_putamen_basal
rs72047341611402368RMI2ENSG00000175643.77.219E-9058862gtex_brain_putamen_basal
rs71892391611402515RMI2ENSG00000175643.72.449E-12059009gtex_brain_putamen_basal
rs71905801611403470RMI2ENSG00000175643.75.482E-8059964gtex_brain_putamen_basal
rs13458781611404753RMI2ENSG00000175643.78.304E-9061247gtex_brain_putamen_basal
rs13458791611404762RMI2ENSG00000175643.78.29E-9061256gtex_brain_putamen_basal
rs71917001611406803RMI2ENSG00000175643.75.597E-9063297gtex_brain_putamen_basal
rs125965261611408692RMI2ENSG00000175643.72.235E-10065186gtex_brain_putamen_basal
rs350519651611415593RMI2ENSG00000175643.72.525E-10072087gtex_brain_putamen_basal
rs620236351611418313RMI2ENSG00000175643.74.398E-10074807gtex_brain_putamen_basal
rs123254951611418328RMI2ENSG00000175643.74.945E-13074822gtex_brain_putamen_basal
rs124489601611419378RMI2ENSG00000175643.74.844E-10075872gtex_brain_putamen_basal
rs110749601611420185RMI2ENSG00000175643.72.083E-9076679gtex_brain_putamen_basal
rs110749611611422245RMI2ENSG00000175643.74.844E-10078739gtex_brain_putamen_basal
rs29038261611424354RMI2ENSG00000175643.73.808E-9080848gtex_brain_putamen_basal
rs125983611611426176RMI2ENSG00000175643.77.591E-10082670gtex_brain_putamen_basal
rs125978931611426331RMI2ENSG00000175643.71.124E-12082825gtex_brain_putamen_basal
rs285020091611426541RMI2ENSG00000175643.73.321E-7083035gtex_brain_putamen_basal
rs116492541611426729RMI2ENSG00000175643.75.387E-10083223gtex_brain_putamen_basal
rs116453181611426730RMI2ENSG00000175643.75.387E-10083224gtex_brain_putamen_basal
rs80631671611426972RMI2ENSG00000175643.75.955E-10083466gtex_brain_putamen_basal
rs80440101611427106RMI2ENSG00000175643.75.955E-10083600gtex_brain_putamen_basal
rs64981801611427123RMI2ENSG00000175643.75.955E-10083617gtex_brain_putamen_basal
rs71851581611427426RMI2ENSG00000175643.75.955E-10083920gtex_brain_putamen_basal
rs19896981611428372RMI2ENSG00000175643.75.955E-10084866gtex_brain_putamen_basal
rs133342031611428538RMI2ENSG00000175643.73.333E-7085032gtex_brain_putamen_basal
rs127087221611428905RMI2ENSG00000175643.73.419E-7085399gtex_brain_putamen_basal
rs596796841611429242RMI2ENSG00000175643.71.298E-6085736gtex_brain_putamen_basal
rs284696341611429939RMI2ENSG00000175643.71.519E-9086433gtex_brain_putamen_basal
rs101634101611430615RMI2ENSG00000175643.73.345E-7087109gtex_brain_putamen_basal
rs71996241611431464RMI2ENSG00000175643.75.949E-8087958gtex_brain_putamen_basal
rs3977546751611431778RMI2ENSG00000175643.76.74E-10088272gtex_brain_putamen_basal
rs71877411611433103RMI2ENSG00000175643.72.488E-12089597gtex_brain_putamen_basal
rs71949781611433811RMI2ENSG00000175643.75.074E-7090305gtex_brain_putamen_basal
rs125996001611434102RMI2ENSG00000175643.72.259E-9090596gtex_brain_putamen_basal
rs99299971611434941RMI2ENSG00000175643.72.262E-9091435gtex_brain_putamen_basal
rs620236581611435171RMI2ENSG00000175643.74.844E-10091665gtex_brain_putamen_basal
rs124460941611435743RMI2ENSG00000175643.74.844E-10092237gtex_brain_putamen_basal
rs124468811611435855RMI2ENSG00000175643.74.844E-10092349gtex_brain_putamen_basal
rs116451461611436069RMI2ENSG00000175643.74.807E-10092563gtex_brain_putamen_basal
rs116454041611436629RMI2ENSG00000175643.71.021E-9093123gtex_brain_putamen_basal
rs124448821611436755RMI2ENSG00000175643.74.706E-10093249gtex_brain_putamen_basal
rs124477821611437388RMI2ENSG00000175643.74.623E-10093882gtex_brain_putamen_basal
rs121491601611439303RMI2ENSG00000175643.71.383E-12095797gtex_brain_putamen_basal
rs9187381611439679RMI2ENSG00000175643.76.177E-11096173gtex_brain_putamen_basal
rs348500171611440032RMI2ENSG00000175643.75.974E-10096526gtex_brain_putamen_basal
rs360905511611443873RMI2ENSG00000175643.76.001E-100100367gtex_brain_putamen_basal
rs10611281611445404RMI2ENSG00000175643.72E-60101898gtex_brain_putamen_basal
rs3979393741611445625RMI2ENSG00000175643.71.63E-80102119gtex_brain_putamen_basal
rs340074961611446143RMI2ENSG00000175643.75.962E-100102637gtex_brain_putamen_basal
rs620256631611448053RMI2ENSG00000175643.77.933E-90104547gtex_brain_putamen_basal
rs116489401611449536RMI2ENSG00000175643.79.861E-80106030gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
PYEON HPV POSITIVE TUMORS UP 9847All SZGR 2.0 genes in this pathway
WANG LMO4 TARGETS UP 372227All SZGR 2.0 genes in this pathway
SLEBOS HEAD AND NECK CANCER WITH HPV UP 8443All SZGR 2.0 genes in this pathway
KINSEY TARGETS OF EWSR1 FLII FUSION UP 1278748All SZGR 2.0 genes in this pathway
DODD NASOPHARYNGEAL CARCINOMA DN 1375806All SZGR 2.0 genes in this pathway
LINDGREN BLADDER CANCER CLUSTER 3 UP 329196All SZGR 2.0 genes in this pathway
NUYTTEN EZH2 TARGETS DN 1024594All SZGR 2.0 genes in this pathway
LOCKWOOD AMPLIFIED IN LUNG CANCER 214139All SZGR 2.0 genes in this pathway
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY UP 236139All SZGR 2.0 genes in this pathway
CREIGHTON ENDOCRINE THERAPY RESISTANCE 1 528324All SZGR 2.0 genes in this pathway
ACEVEDO LIVER CANCER UP 973570All SZGR 2.0 genes in this pathway
ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UP 863514All SZGR 2.0 genes in this pathway
GRADE COLON AND RECTAL CANCER UP 285167All SZGR 2.0 genes in this pathway
LEE LIVER CANCER SURVIVAL DN 175103All SZGR 2.0 genes in this pathway
CHIANG LIVER CANCER SUBCLASS PROLIFERATION UP 178108All SZGR 2.0 genes in this pathway
WHITFIELD CELL CYCLE G1 S 14776All SZGR 2.0 genes in this pathway
FORTSCHEGGER PHF8 TARGETS DN 784464All SZGR 2.0 genes in this pathway