DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DKENV
Uniprot ID:
Q9BY12
Source protein:
S phase cyclin A-associated protein in the endoplasmic reticulum
Source gene:
SCAPER
Class:
DEG_APCC_KENBOX_2
Location:
299:303
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8406
ASA_SCORE:
104.84
COIL:
0.6764
CONS_SCORE:
0.3286
DSS_SCORE:
0.5654
HELIX:
0.291
FCONS_SCORE:
0.9482
RIG_SCORE:
0.7634
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P307R
TCGA-E2-A109
BRCA
TCGA
DKENV
DEG_APCC_KENBOX_2
0.2222
p.P307R
DO4766
BRCA
ICGC
DKENV
DEG_APCC_KENBOX_2
0.2222
p.K313R
TCGA-F5-6814
READ
TCGA
DKENV
DEG_APCC_KENBOX_2
0.5
p.K313R
DO36556
READ
ICGC
DKENV
DEG_APCC_KENBOX_2
0.5
p.V303I
DO46761
PAEN
ICGC
DKENV
DEG_APCC_KENBOX_2
0.5965
p.T289A
SIDM00082
Melanoma
GDSC
DKENV
DEG_APCC_KENBOX_2
0.0556
p.T289A
ACH-001190
Skin Cancer
CCLE
DKENV
DEG_APCC_KENBOX_2
0.0556
p.T289A
SK-MEL-2
skin
COSMIC
DKENV
DEG_APCC_KENBOX_2
0.0556
p.S298I
ACH-000791
Lung Cancer
CCLE
DKENV
DEG_APCC_KENBOX_2
0.75
Drug responses associated with SCAPER mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DKENV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43683
Mitotic checkpoint serine/threonine-protein kinase BUB1
DEG_APCC_KENBOX_2
624:628
DKENV
APC,CDC20,FZR1
0.9776
More...
P21359
Neurofibromin
DEG_APCC_KENBOX_2
2795:2799
DKENV
APC,CDC20,FZR1
0.8116
More...
Q8IUH5
Palmitoyltransferase ZDHHC17
DEG_APCC_KENBOX_2
87:91
DKENV
APC,CDC20,FZR1
0.5783
More...
Q9BY12
S phase cyclin A-associated protein in the endoplasmic reticulum
DEG_APCC_KENBOX_2
299:303
DKENV
APC,CDC20,FZR1
0.8406
More...
Q9NYZ3
G2 and S phase-expressed protein 1
DEG_APCC_KENBOX_2
709:713
DKENV
APC,CDC20,FZR1
0.9319
More...