DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
EKENS
Uniprot ID:
Q13426
Source protein:
DNA repair protein XRCC4
Source gene:
XRCC4
Class:
DEG_APCC_KENBOX_2
Location:
295:299
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9752
ASA_SCORE:
118.6
COIL:
0.7992
CONS_SCORE:
0.5146
DSS_SCORE:
0.8368
HELIX:
0.1752
FCONS_SCORE:
1.0205
RIG_SCORE:
0.5827
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q289H
TCGA-05-4424
LUAD
TCGA
EKENS
DEG_APCC_KENBOX_2
0.1667
p.Q289H
TCGA-BR-6852
STAD
TCGA
EKENS
DEG_APCC_KENBOX_2
0.1667
p.Q289H
DO23672
LUAD
ICGC
EKENS
DEG_APCC_KENBOX_2
0.1667
p.Q289H
DO38202
STAD
ICGC
EKENS
DEG_APCC_KENBOX_2
0.1667
p.Q289H
SIDM00333
Endometrial Carcinoma
GDSC
EKENS
DEG_APCC_KENBOX_2
0.1667
p.Q289H
ACH-000988
Endometrial/Uterine Cancer
CCLE
EKENS
DEG_APCC_KENBOX_2
0.1667
p.Q289H
MFE-319
endometrium
COSMIC
EKENS
DEG_APCC_KENBOX_2
0.1667
p.T308M
TCGA-A5-A0G2
UCEC
TCGA
EKENS
DEG_APCC_KENBOX_2
0.0833
p.T308M
TCGA-C5-A901
CESC
TCGA
EKENS
DEG_APCC_KENBOX_2
0.0833
p.S303Y
TCGA-AA-3510
COAD
TCGA
EKENS
DEG_APCC_KENBOX_2
0.2222
p.R300M
TCGA-AD-5900
COAD
TCGA
EKENS
DEG_APCC_KENBOX_2
0.3056
p.P288H
TCGA-EE-A29E
SKCM
TCGA
EKENS
DEG_APCC_KENBOX_2
0.1389
p.P288H
DO37831
SKCM
ICGC
EKENS
DEG_APCC_KENBOX_2
0.1389
p.T306M
DO49914
CESC
ICGC
EKENS
DEG_APCC_KENBOX_2
0.1389
p.T306M
DO41235
UCEC
ICGC
EKENS
DEG_APCC_KENBOX_2
0.1389
p.K309R
DO9010
COAD
ICGC
EKENS
DEG_APCC_KENBOX_2
0.0556
p.S301Y
DO7783
COAD
ICGC
EKENS
DEG_APCC_KENBOX_2
0.2778
p.K309M
DO228574
LICA
ICGC
EKENS
DEG_APCC_KENBOX_2
0.0556
p.S299A
SIDM00193
Colorectal Carcinoma
GDSC
EKENS
DEG_APCC_KENBOX_2
0.7588
p.S299A
SNU-81
large_intestine
COSMIC
EKENS
DEG_APCC_KENBOX_2
0.7588
Drug responses associated with XRCC4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of EKENS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15014
Zinc finger protein 609
DEG_APCC_KENBOX_2
159:163
EKENS
APC,CDC20,FZR1
0.903
More...
Q13426
DNA repair protein XRCC4
DEG_APCC_KENBOX_2
295:299
EKENS
APC,CDC20,FZR1
0.9752
More...
Q2NKX8
DNA excision repair protein ERCC-6-like
DEG_APCC_KENBOX_2
976:980
EKENS
APC,CDC20,FZR1
0.9554
More...
Q96L73
Histone-lysine N-methyltransferase, H3 lysine-36 specific
DEG_APCC_KENBOX_2
1179:1183
EKENS
APC,CDC20,FZR1
0.8074
More...
Q96T88
E3 ubiquitin-protein ligase UHRF1
DEG_APCC_KENBOX_2
621:625
EKENS
APC,CDC20,FZR1
0.766
More...