DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPPPS
Uniprot ID:
A7MD48
Source protein:
Serine/arginine repetitive matrix protein 4
Source gene:
SRRM4
Class:
DEG_SCF_FBW7_1
Location:
100:105
E3 ligase:
FBXW7
DEGRON score:
0.8885
ASA_SCORE:
92.4833
COIL:
0.9717
CONS_SCORE:
0.6323
DSS_SCORE:
0.8494
HELIX:
0.0143
FCONS_SCORE:
0.8928
RIG_SCORE:
0.5531
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.H92R
TCGA-DI-A1BU
UCEC
TCGA
LTPPPS
DEG_SCF_FBW7_1
0.1111
p.H92R
DO42023
UCEC
ICGC
LTPPPS
DEG_SCF_FBW7_1
0.1111
p.P104L
TCGA-ER-A193
SKCM
TCGA
LTPPPS
DEG_SCF_FBW7_1
0.6471
p.P104L
DO47368
SKCM
ICGC
LTPPPS
DEG_SCF_FBW7_1
0.6471
p.P102L
DO50814
LIRI
ICGC
LTPPPS
DEG_SCF_FBW7_1
0.7582
p.K112N
DO230946
LUSC
ICGC
LTPPPS
DEG_SCF_FBW7_1
0.25
p.K112N
DO224605
LUSC
ICGC
LTPPPS
DEG_SCF_FBW7_1
0.25
p.R90I
DO231186
LUSC
ICGC
LTPPPS
DEG_SCF_FBW7_1
0.0556
p.R90I
SIDM01107
Melanoma
GDSC
LTPPPS
DEG_SCF_FBW7_1
0.0556
p.R90I
ACH-000465
Skin Cancer
CCLE
LTPPPS
DEG_SCF_FBW7_1
0.0556
p.R90I
SK-MEL-1
skin
COSMIC
LTPPPS
DEG_SCF_FBW7_1
0.0556
p.P102S
SIDM00718
Non-Small Cell Lung Carcinoma
GDSC
LTPPPS
DEG_SCF_FBW7_1
0.6752
p.P102S
ACH-000860
Lung Cancer
CCLE
LTPPPS
DEG_SCF_FBW7_1
0.6752
p.P102S
NCI-H358
lung
COSMIC
LTPPPS
DEG_SCF_FBW7_1
0.6752
p.G91E
SIDM00810
Non-Small Cell Lung Carcinoma
GDSC
LTPPPS
DEG_SCF_FBW7_1
0.0833
p.G91E
ACH-000757
Lung Cancer
CCLE
LTPPPS
DEG_SCF_FBW7_1
0.0833
p.G91E
A427
lung
COSMIC
LTPPPS
DEG_SCF_FBW7_1
0.0833
p.K111T
SIDM00534
Colorectal Carcinoma
GDSC
LTPPPS
DEG_SCF_FBW7_1
0.2778
p.K111T
ACH-000986
Colon/Colorectal Cancer
CCLE
LTPPPS
DEG_SCF_FBW7_1
0.2778
p.K111T
HT-115
large_intestine
COSMIC
LTPPPS
DEG_SCF_FBW7_1
0.2778
p.S105F
ACH-002396
Bone Cancer
CCLE
LTPPPS
DEG_SCF_FBW7_1
0.7982
p.S105F
Sarc9371
bone
COSMIC
LTPPPS
DEG_SCF_FBW7_1
0.7982
Drug responses associated with SRRM4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPPPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A7MD48
Serine/arginine repetitive matrix protein 4
DEG_SCF_FBW7_1
100:105
LTPPPS
FBXW7
0.8885
More...
P36956
Sterol regulatory element-binding protein 1
DEG_SCF_FBW7_1
425:430
LTPPPS
FBXW7
0.999
More...
Q13887
Krueppel-like factor 5
DEG_SCF_FBW7_1
322:327
LTPPPS
FBXW7
0.9988
More...
Q8TB72
Pumilio homolog 2
DEG_SCF_FBW7_1
635:640
LTPPPS
FBXW7
0.9898
More...