DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPAPS
Uniprot ID:
Q9H987
Source protein:
Synaptopodin 2-like protein
Source gene:
SYNPO2L
Class:
DEG_SCF_FBW7_1
Location:
457:462
E3 ligase:
FBXW7
DEGRON score:
0.9753
ASA_SCORE:
85.95
COIL:
0.9415
CONS_SCORE:
0.5569
DSS_SCORE:
0.6936
HELIX:
0.0138
FCONS_SCORE:
0.9945
RIG_SCORE:
0.6083
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G454A
TCGA-HU-A4GU
STAD
TCGA
PTPAPS
DEG_SCF_FBW7_1
0.25
p.G454A
DO47849
STAD
ICGC
PTPAPS
DEG_SCF_FBW7_1
0.25
p.A460V
TCGA-W3-AA1V
SKCM
TCGA
PTPAPS
DEG_SCF_FBW7_1
0.5825
p.A460V
DO51276
SKCM
ICGC
PTPAPS
DEG_SCF_FBW7_1
0.5825
p.P459S
DO222454
BTCA
ICGC
PTPAPS
DEG_SCF_FBW7_1
0.6752
p.P459S
DO233882
GACA
ICGC
PTPAPS
DEG_SCF_FBW7_1
0.6752
p.S462I
DO6690
CLLE
ICGC
PTPAPS
DEG_SCF_FBW7_1
0.7341
p.P461L
DO234401
ESAD
ICGC
PTPAPS
DEG_SCF_FBW7_1
0.6471
p.P449R
DO229353
LAML
ICGC
PTPAPS
DEG_SCF_FBW7_1
0.1111
p.A468D
DO231957
LICA
ICGC
PTPAPS
DEG_SCF_FBW7_1
0.1667
p.E458D
CW-2
large_intestine
COSMIC
PTPAPS
DEG_SCF_FBW7_1
0.6758
Drug responses associated with SYNPO2L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPAPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P46695
Radiation-inducible immediate-early gene IEX-1
DEG_SCF_FBW7_1
17:22
PTPAPS
FBXW7
0.9989
More...
Q07157
Tight junction protein ZO-1
DEG_SCF_FBW7_1
959:964
PTPAPS
FBXW7
0.9995
More...
Q9H987
Synaptopodin 2-like protein
DEG_SCF_FBW7_1
457:462
PTPAPS
FBXW7
0.9753
More...
Q9Y467
Sal-like protein 2
DEG_SCF_FBW7_1
298:303
PTPAPS
FBXW7
0.9808
More...