DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPGAS
Uniprot ID:
Q86TM6
Source protein:
E3 ubiquitin-protein ligase synoviolin
Source gene:
SYVN1
Class:
DEG_SCF_FBW7_1
Location:
567:572
E3 ligase:
FBXW7
DEGRON score:
0.9928
ASA_SCORE:
83.5333
COIL:
0.9693
CONS_SCORE:
0.2125
DSS_SCORE:
0.8266
HELIX:
0.0107
FCONS_SCORE:
0.9742
RIG_SCORE:
0.5002
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M578I
TCGA-L5-A4OE
ESCA
TCGA
PTPGAS
DEG_SCF_FBW7_1
0.1667
p.S561R
TCGA-OR-A5LC
ACC
TCGA
PTPGAS
DEG_SCF_FBW7_1
0.1667
p.S561R
DO229027
LICA
ICGC
PTPGAS
DEG_SCF_FBW7_1
0.1667
p.P567R
DO233876
GACA
ICGC
PTPGAS
DEG_SCF_FBW7_1
0.7512
p.P562H
DU-145
prostate
COSMIC
PTPGAS
DEG_SCF_FBW7_1
0.6389
p.L559P
CCK-81
large_intestine
COSMIC
PTPGAS
DEG_SCF_FBW7_1
0.1111
p.A564T
COLO-824
breast
COSMIC
PTPGAS
DEG_SCF_FBW7_1
0.25
Drug responses associated with SYVN1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPGAS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75533
Splicing factor 3B subunit 1
DEG_SCF_FBW7_1
327:332
PTPGAS
FBXW7
0.9834
More...
Q86TM6
E3 ubiquitin-protein ligase synoviolin
DEG_SCF_FBW7_1
567:572
PTPGAS
FBXW7
0.9928
More...
Q8NAG6
Ankyrin repeat and LEM domain-containing protein 1
DEG_SCF_FBW7_1
310:315
PTPGAS
FBXW7
0.9884
More...
Q5VZ18
SH2 domain-containing adapter protein E
DEG_SCF_FBW7_1
5:10
PTPGAS
FBXW7
0.9762
More...