DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
QKENV
Uniprot ID:
Q9UHB6
Source protein:
LIM domain and actin-binding protein 1
Source gene:
LIMA1
Class:
DEG_APCC_KENBOX_2
Location:
305:309
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9766
ASA_SCORE:
119.74
COIL:
0.8448
CONS_SCORE:
0.4403
DSS_SCORE:
0.5641
HELIX:
0.081
FCONS_SCORE:
1.0865
RIG_SCORE:
0.6599
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E307V
TCGA-86-7711
LUAD
TCGA
QKENV
DEG_APCC_KENBOX_2
0.7693
p.E304G
TCGA-A4-A7UZ
KIRP
TCGA
QKENV
DEG_APCC_KENBOX_2
0.3056
p.E297K
TCGA-AN-A046
BRCA
TCGA
QKENV
DEG_APCC_KENBOX_2
0.1111
p.E297K
SIDM00225
Melanoma
GDSC
QKENV
DEG_APCC_KENBOX_2
0.1111
p.E297K
SIDM01546
Kidney Carcinoma
GDSC
QKENV
DEG_APCC_KENBOX_2
0.1111
p.E297K
ACH-000234
Kidney Cancer
CCLE
QKENV
DEG_APCC_KENBOX_2
0.1111
p.E297K
ACH-002143
Skin Cancer
CCLE
QKENV
DEG_APCC_KENBOX_2
0.1111
p.E297K
IST-MEL1
skin
COSMIC
QKENV
DEG_APCC_KENBOX_2
0.1111
p.E307D
TCGA-B5-A1MR
UCEC
TCGA
QKENV
DEG_APCC_KENBOX_2
0.6758
p.E297G
TCGA-CR-7370
HNSC
TCGA
QKENV
DEG_APCC_KENBOX_2
0.1111
p.I298T
TCGA-CV-7248
HNSC
TCGA
QKENV
DEG_APCC_KENBOX_2
0.1389
p.S298F
DO51908
BLCA
ICGC
QKENV
DEG_APCC_KENBOX_2
0.1389
p.Q295E
DO23672
LUAD
ICGC
QKENV
DEG_APCC_KENBOX_2
0.0556
p.V305M
DO38202
STAD
ICGC
QKENV
DEG_APCC_KENBOX_2
0.7208
p.P313H
SIDM00789
Colorectal Carcinoma
GDSC
QKENV
DEG_APCC_KENBOX_2
0.2222
p.P313H
ACH-000997
Colon/Colorectal Cancer
CCLE
QKENV
DEG_APCC_KENBOX_2
0.2222
p.P313H
ACH-001061
Colon/Colorectal Cancer
CCLE
QKENV
DEG_APCC_KENBOX_2
0.2222
p.P313H
HCT-15
large_intestine
COSMIC
QKENV
DEG_APCC_KENBOX_2
0.2222
p.S307P
GR-ST
haematopoietic_and_lymphoid_tissue
COSMIC
QKENV
DEG_APCC_KENBOX_2
0.6752
p.S306P
GR-ST
haematopoietic_and_lymphoid_tissue
COSMIC
QKENV
DEG_APCC_KENBOX_2
0.6752
Drug responses associated with LIMA1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of QKENV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P10243
Myb-related protein A
DEG_APCC_KENBOX_2
533:537
QKENV
APC,CDC20,FZR1
0.9267
More...
P46013
Proliferation marker protein Ki-67
DEG_APCC_KENBOX_2
253:257
QKENV
APC,CDC20,FZR1
0.8632
More...
Q9UHB6
LIM domain and actin-binding protein 1
DEG_APCC_KENBOX_2
305:309
QKENV
APC,CDC20,FZR1
0.9766
More...
Q9Y6A5
Transforming acidic coiled-coil-containing protein 3
DEG_APCC_KENBOX_2
40:44
QKENV
APC,CDC20,FZR1
0.9939
More...