DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
RKENP
Uniprot ID:
Q9C040
Source protein:
Tripartite motif-containing protein 2
Source gene:
TRIM2
Class:
DEG_APCC_KENBOX_2
Location:
463:467
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6409
ASA_SCORE:
67.54
COIL:
0.4664
CONS_SCORE:
0.2891
DSS_SCORE:
0.4877
HELIX:
0.0158
FCONS_SCORE:
0.9402
RIG_SCORE:
0.7069
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K474N
TCGA-85-8277
LUSC
TCGA
RKENP
DEG_APCC_KENBOX_2
0.1389
p.V465A
TCGA-AY-6197
COAD
TCGA
RKENP
DEG_APCC_KENBOX_2
0.6936
p.P468L
TCGA-BT-A42B
BLCA
TCGA
RKENP
DEG_APCC_KENBOX_2
0.3056
p.G469E
TCGA-D3-A2JH
SKCM
TCGA
RKENP
DEG_APCC_KENBOX_2
0.2778
p.G469V
TCGA-X9-A973
SARC
TCGA
RKENP
DEG_APCC_KENBOX_2
0.2778
p.D471V
DO9956
COAD
ICGC
RKENP
DEG_APCC_KENBOX_2
0.2222
p.E469K
DO222884
COCA
ICGC
RKENP
DEG_APCC_KENBOX_2
0.2778
p.E469K
DO222816
COCA
ICGC
RKENP
DEG_APCC_KENBOX_2
0.2778
p.E469K
DO41488
UCEC
ICGC
RKENP
DEG_APCC_KENBOX_2
0.2778
p.M457I
DO229009
LICA
ICGC
RKENP
DEG_APCC_KENBOX_2
0.1667
p.A455S
DO25967
LUAD
ICGC
RKENP
DEG_APCC_KENBOX_2
0.1111
p.A455S
ACH-002145
Lung Cancer
CCLE
RKENP
DEG_APCC_KENBOX_2
0.1111
p.A455S
IST-SL2
lung
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.1111
p.P467S
DO222843
MELA
ICGC
RKENP
DEG_APCC_KENBOX_2
0.5641
p.A455T
DO232761
PBCA
ICGC
RKENP
DEG_APCC_KENBOX_2
0.1111
p.R453K
DO218900
SKCA
ICGC
RKENP
DEG_APCC_KENBOX_2
0.0556
p.P467L
DO51299
SKCM
ICGC
RKENP
DEG_APCC_KENBOX_2
0.6471
p.D471N
DO41572
UCEC
ICGC
RKENP
DEG_APCC_KENBOX_2
0.2222
p.R453I
DO41542
UCEC
ICGC
RKENP
DEG_APCC_KENBOX_2
0.0556
p.V461M
SIDM01943
Colorectal Carcinoma
GDSC
RKENP
DEG_APCC_KENBOX_2
0.2778
p.R464H
SIDM00449
B-Lymphoblastic Leukemia
GDSC
RKENP
DEG_APCC_KENBOX_2
0.8244
p.R464H
SIDM00382
Glioblastoma
GDSC
RKENP
DEG_APCC_KENBOX_2
0.8244
p.R464H
RCH-ACV
haematopoietic_and_lymphoid_tissue
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.8244
p.R464H
SF126
central_nervous_system
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.8244
p.T458I
SIDM00333
Endometrial Carcinoma
GDSC
RKENP
DEG_APCC_KENBOX_2
0.1944
p.T458I
MFE-319
endometrium
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.1944
Drug responses associated with TRIM2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O76080
AN1-type zinc finger protein 5
DEG_APCC_KENBOX_2
199:203
RKENP
APC,CDC20,FZR1
0.5072
More...
Q99708
DNA endonuclease RBBP8
DEG_APCC_KENBOX_2
178:182
RKENP
APC,CDC20,FZR1
0.8804
More...
Q9C040
Tripartite motif-containing protein 2
DEG_APCC_KENBOX_2
463:467
RKENP
APC,CDC20,FZR1
0.6409
More...
Q9P1Y6
PHD and RING finger domain-containing protein 1
DEG_APCC_KENBOX_2
809:813
RKENP
APC,CDC20,FZR1
0.999
More...