DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RKENP
Uniprot ID:
Q9P1Y6
Source protein:
PHD and RING finger domain-containing protein 1
Source gene:
PHRF1
Class:
DEG_APCC_KENBOX_2
Location:
809:813
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.999
ASA_SCORE:
122.8
COIL:
0.855
CONS_SCORE:
0.3734
DSS_SCORE:
0.6494
HELIX:
0.1278
FCONS_SCORE:
1.0878
RIG_SCORE:
0.667
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I818M
TCGA-05-4382
LUAD
TCGA
RKENP
DEG_APCC_KENBOX_2
0.6389
p.D804N
TCGA-AA-3984
COAD
TCGA
RKENP
DEG_APCC_KENBOX_2
0.1944
p.S813L
TCGA-BA-4077
HNSC
TCGA
RKENP
DEG_APCC_KENBOX_2
0.7667
p.K822E
TCGA-BR-8487
STAD
TCGA
RKENP
DEG_APCC_KENBOX_2
0.0833
p.D803G
TCGA-CK-4951
COAD
TCGA
RKENP
DEG_APCC_KENBOX_2
0.1667
p.D803N
DO9002
COAD
ICGC
RKENP
DEG_APCC_KENBOX_2
0.1667
p.D802G
DO10582
COAD
ICGC
RKENP
DEG_APCC_KENBOX_2
0.1389
p.L814H
DO233884
GACA
ICGC
RKENP
DEG_APCC_KENBOX_2
0.75
p.S812L
DO15647
HNSC
ICGC
RKENP
DEG_APCC_KENBOX_2
0.7667
p.E809G
DO232025
LICA
ICGC
RKENP
DEG_APCC_KENBOX_2
0.7199
p.I817M
DO24900
LUAD
ICGC
RKENP
DEG_APCC_KENBOX_2
0.2222
p.K821E
DO47867
STAD
ICGC
RKENP
DEG_APCC_KENBOX_2
0.2222
p.L816I
SIDM01052
Ovarian Carcinoma
GDSC
RKENP
DEG_APCC_KENBOX_2
0.25
p.L816I
EFO-21
ovary
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.25
p.L815I
ACH-000308
Ovarian Cancer
CCLE
RKENP
DEG_APCC_KENBOX_2
0.2778
p.L815I
EFO-21
ovary
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.2778
p.L814I
EFO-21
ovary
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.75
p.L812I
EFO-21
ovary
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.7174
p.S823G
Hep_3B2_1-7
NS
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.1667
p.R822Q
MOLT-13
haematopoietic_and_lymphoid_tissue
COSMIC
RKENP
DEG_APCC_KENBOX_2
0.0833
Drug responses associated with PHRF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O76080
AN1-type zinc finger protein 5
DEG_APCC_KENBOX_2
199:203
RKENP
APC,CDC20,FZR1
0.5072
More...
Q99708
DNA endonuclease RBBP8
DEG_APCC_KENBOX_2
178:182
RKENP
APC,CDC20,FZR1
0.8804
More...
Q9C040
Tripartite motif-containing protein 2
DEG_APCC_KENBOX_2
463:467
RKENP
APC,CDC20,FZR1
0.6409
More...
Q9P1Y6
PHD and RING finger domain-containing protein 1
DEG_APCC_KENBOX_2
809:813
RKENP
APC,CDC20,FZR1
0.999
More...