DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
SKENF
Uniprot ID:
O95425
Source protein:
Supervillin
Source gene:
SVIL
Class:
DEG_APCC_KENBOX_2
Location:
1414:1418
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9572
ASA_SCORE:
77.82
COIL:
0.6984
CONS_SCORE:
0.5995
DSS_SCORE:
0.234
HELIX:
0.2254
FCONS_SCORE:
1.0188
RIG_SCORE:
0.7321
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1410V
TCGA-CG-4465
STAD
TCGA
SKENF
DEG_APCC_KENBOX_2
0.2222
p.A1410V
DO38627
STAD
ICGC
SKENF
DEG_APCC_KENBOX_2
0.2222
p.T1408N
TCGA-D1-A2G5
UCEC
TCGA
SKENF
DEG_APCC_KENBOX_2
0.1667
p.T1408N
DO40918
UCEC
ICGC
SKENF
DEG_APCC_KENBOX_2
0.1667
p.R1424L
TCGA-JV-A75J
SARC
TCGA
SKENF
DEG_APCC_KENBOX_2
0.1667
p.R1424L
DO220183
SARC
ICGC
SKENF
DEG_APCC_KENBOX_2
0.1667
p.L1423M
TCGA-MP-A4TD
LUAD
TCGA
SKENF
DEG_APCC_KENBOX_2
0.1944
p.L1423M
DO45363
LUAD
ICGC
SKENF
DEG_APCC_KENBOX_2
0.1944
p.E1406D
DO234413
ESAD
ICGC
SKENF
DEG_APCC_KENBOX_2
0.1111
p.S1405L
DO233193
GACA
ICGC
SKENF
DEG_APCC_KENBOX_2
0.5278
p.S1414T
SIDM00203
Ewing's Sarcoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.6005
p.S1414T
SIDM00052
Esophageal Squamous Cell Carcinoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.6005
p.A1404V
HCT-116
large_intestine
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.0556
p.K1409N
HCC-78
lung
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.1944
Drug responses associated with SVIL mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENF
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75330
Hyaluronan mediated motility receptor
DEG_APCC_KENBOX_2
695:699
SKENF
APC,CDC20,FZR1
0.9622
More...
O95425
Supervillin
DEG_APCC_KENBOX_2
1414:1418
SKENF
APC,CDC20,FZR1
0.9572
More...
Q8NCD3
Holliday junction recognition protein
DEG_APCC_KENBOX_2
320:324
SKENF
APC,CDC20,FZR1
0.9053
More...
Q9Y2R2
Tyrosine-protein phosphatase non-receptor type 22
DEG_APCC_KENBOX_2
465:469
SKENF
APC,CDC20,FZR1
0.9549
More...