DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
SKENF
Uniprot ID:
Q9Y2R2
Source protein:
Tyrosine-protein phosphatase non-receptor type 22
Source gene:
PTPN22
Class:
DEG_APCC_KENBOX_2
Location:
465:469
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9549
ASA_SCORE:
100.04
COIL:
0.7498
CONS_SCORE:
0.26
DSS_SCORE:
0.5444
HELIX:
0.162
FCONS_SCORE:
0.9944
RIG_SCORE:
0.7308
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S465I
TCGA-A5-A0G1
UCEC
TCGA
SKENF
DEG_APCC_KENBOX_2
0.623
p.S465I
TCGA-AA-A010
COAD
TCGA
SKENF
DEG_APCC_KENBOX_2
0.623
p.S465I
DO42472
UCEC
ICGC
SKENF
DEG_APCC_KENBOX_2
0.623
p.S479C
TCGA-AR-A0TX
BRCA
TCGA
SKENF
DEG_APCC_KENBOX_2
0.0556
p.S479C
DO1663
BRCA
ICGC
SKENF
DEG_APCC_KENBOX_2
0.0556
p.E467G
TCGA-BS-A0UF
UCEC
TCGA
SKENF
DEG_APCC_KENBOX_2
0.7199
p.E467G
DO41488
UCEC
ICGC
SKENF
DEG_APCC_KENBOX_2
0.7199
p.E467G
SIDM00538
Esophageal Carcinoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.7199
p.E467G
ACH-001497
Esophageal Cancer
CCLE
SKENF
DEG_APCC_KENBOX_2
0.7199
p.E467G
ESO51
oesophagus
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.7199
p.E462D
TCGA-BS-A0UF
UCEC
TCGA
SKENF
DEG_APCC_KENBOX_2
0.25
p.E462D
DO41488
UCEC
ICGC
SKENF
DEG_APCC_KENBOX_2
0.25
p.Q475E
TCGA-BT-A2LA
BLCA
TCGA
SKENF
DEG_APCC_KENBOX_2
0.1667
p.Q475E
TCGA-GV-A3QI
BLCA
TCGA
SKENF
DEG_APCC_KENBOX_2
0.1667
p.Q475E
DO470
BLCA
ICGC
SKENF
DEG_APCC_KENBOX_2
0.1667
p.Q475E
DO561
BLCA
ICGC
SKENF
DEG_APCC_KENBOX_2
0.1667
p.E467K
TCGA-D3-A2JH
SKCM
TCGA
SKENF
DEG_APCC_KENBOX_2
0.7022
p.E467K
DO47263
SKCM
ICGC
SKENF
DEG_APCC_KENBOX_2
0.7022
p.E467K
SIDM00545
Melanoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.7022
p.E467K
ACH-000987
Skin Cancer
CCLE
SKENF
DEG_APCC_KENBOX_2
0.7022
p.E467K
Mewo
skin
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.7022
p.S479Y
TCGA-FI-A2D5
UCEC
TCGA
SKENF
DEG_APCC_KENBOX_2
0.0556
p.S479Y
DO41331
UCEC
ICGC
SKENF
DEG_APCC_KENBOX_2
0.0556
p.F469C
TCGA-FI-A2D5
UCEC
TCGA
SKENF
DEG_APCC_KENBOX_2
0.5996
p.F469C
DO41331
UCEC
ICGC
SKENF
DEG_APCC_KENBOX_2
0.5996
p.Q456E
SIDM01087
Melanoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.0833
p.Q456E
SIDM01118
Small Cell Lung Carcinoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.0833
p.Q456E
SIDM00511
Small Cell Lung Carcinoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.0833
p.Q456E
SIDM00628
Breast Carcinoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.0833
p.F469L
SIDM01026
Esophageal Squamous Cell Carcinoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.587
p.F469L
ACH-000824
Esophageal Cancer
CCLE
SKENF
DEG_APCC_KENBOX_2
0.587
p.F469L
KYSE-510
oesophagus
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.587
p.R458T
SIDM00603
Head and Neck Carcinoma
GDSC
SKENF
DEG_APCC_KENBOX_2
0.1389
p.R458T
ACH-001543
Head and Neck Cancer
CCLE
SKENF
DEG_APCC_KENBOX_2
0.1389
p.R458T
KOSC-2
upper_aerodigestive_tract
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.1389
p.N479T
MCC13
skin
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.0556
p.Y479C
HCC-78
lung
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.0556
p.Y479C
MOLT-13
haematopoietic_and_lymphoid_tissue
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.0556
p.V458A
SN12C
kidney
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.1389
p.S456Y
SNU-81
large_intestine
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.0833
p.S469Y
LNCaP-Clone-FGC
prostate
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.712
p.E478K
TMK-1
stomach
COSMIC
SKENF
DEG_APCC_KENBOX_2
0.0833
Drug responses associated with PTPN22 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENF
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75330
Hyaluronan mediated motility receptor
DEG_APCC_KENBOX_2
695:699
SKENF
APC,CDC20,FZR1
0.9622
More...
O95425
Supervillin
DEG_APCC_KENBOX_2
1414:1418
SKENF
APC,CDC20,FZR1
0.9572
More...
Q8NCD3
Holliday junction recognition protein
DEG_APCC_KENBOX_2
320:324
SKENF
APC,CDC20,FZR1
0.9053
More...
Q9Y2R2
Tyrosine-protein phosphatase non-receptor type 22
DEG_APCC_KENBOX_2
465:469
SKENF
APC,CDC20,FZR1
0.9549
More...