DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
SKENP
Uniprot ID:
Q8N999
Source protein:
Uncharacterized protein C12orf29
Source gene:
C12orf29
Class:
DEG_APCC_KENBOX_2
Location:
96:100
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6542
ASA_SCORE:
93.52
COIL:
0.8558
CONS_SCORE:
0.5496
DSS_SCORE:
0.3092
HELIX:
0.1172
FCONS_SCORE:
0.7465
RIG_SCORE:
0.7064
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K97N
TCGA-E6-A1LX
UCEC
TCGA
SKENP
DEG_APCC_KENBOX_2
0.6918
p.K97N
DO41020
UCEC
ICGC
SKENP
DEG_APCC_KENBOX_2
0.6918
p.F93V
TCGA-EO-A22X
UCEC
TCGA
SKENP
DEG_APCC_KENBOX_2
0.25
p.F93V
DO43907
UCEC
ICGC
SKENP
DEG_APCC_KENBOX_2
0.25
p.W105R
TCGA-IB-7651
PAAD
TCGA
SKENP
DEG_APCC_KENBOX_2
0.1944
p.W105R
DO46657
PAAD
ICGC
SKENP
DEG_APCC_KENBOX_2
0.1944
p.R89K
DO233190
GACA
ICGC
SKENP
DEG_APCC_KENBOX_2
0.1389
p.V107I
DO12382
GBM
ICGC
SKENP
DEG_APCC_KENBOX_2
0.1389
p.W105G
SIDM00114
Non-Small Cell Lung Carcinoma
GDSC
SKENP
DEG_APCC_KENBOX_2
0.1944
Drug responses associated with C12orf29 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P37802
Transgelin-2
DEG_APCC_KENBOX_2
155:159
SKENP
APC,CDC20,FZR1
0.9256
More...
Q15283
Ras GTPase-activating protein 2
DEG_APCC_KENBOX_2
840:844
SKENP
APC,CDC20,FZR1
0.9812
More...
Q8TBG4
Ethanolamine-phosphate phospho-lyase
DEG_APCC_KENBOX_2
474:478
SKENP
APC,CDC20,FZR1
0.828
More...
Q8N999
Uncharacterized protein C12orf29
DEG_APCC_KENBOX_2
96:100
SKENP
APC,CDC20,FZR1
0.6542
More...