DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENR
Uniprot ID:
Q4G0J3
Source protein:
La-related protein 7
Source gene:
LARP7
Class:
DEG_APCC_KENBOX_2
Location:
328:332
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9758
ASA_SCORE:
110.18
COIL:
0.5912
CONS_SCORE:
0.3077
DSS_SCORE:
0.4835
HELIX:
0.3818
FCONS_SCORE:
0.9901
RIG_SCORE:
0.6801
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A331S
TCGA-78-8660
LUAD
TCGA
SKENR
DEG_APCC_KENBOX_2
0.7588
p.E342K
TCGA-C5-A2LV
CESC
TCGA
SKENR
DEG_APCC_KENBOX_2
0.1667
p.E335K
DO48987
CESC
ICGC
SKENR
DEG_APCC_KENBOX_2
0.25
p.A324S
DO45321
LUAD
ICGC
SKENR
DEG_APCC_KENBOX_2
0.2222
p.Q324L
SIDM00007
Other Solid Cancers
GDSC
SKENR
DEG_APCC_KENBOX_2
0.2222
p.Q324L
MCC13
skin
COSMIC
SKENR
DEG_APCC_KENBOX_2
0.2222
p.E333D
SIDM00009
Acute Myeloid Leukemia
GDSC
SKENR
DEG_APCC_KENBOX_2
0.3056
p.E333D
MC-1010
haematopoietic_and_lymphoid_tissue
COSMIC
SKENR
DEG_APCC_KENBOX_2
0.3056
p.Q324H
SIDM00054
Pancreatic Carcinoma
GDSC
SKENR
DEG_APCC_KENBOX_2
0.2222
p.Q324H
PL18
pancreas
COSMIC
SKENR
DEG_APCC_KENBOX_2
0.2222
p.E326D
MC-1010
haematopoietic_and_lymphoid_tissue
COSMIC
SKENR
DEG_APCC_KENBOX_2
0.2778
Drug responses associated with LARP7 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENR
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14CB8
Rho GTPase-activating protein 19
DEG_APCC_KENBOX_2
459:463
SKENR
APC,CDC20,FZR1
0.996
More...
Q4G0J3
La-related protein 7
DEG_APCC_KENBOX_2
328:332
SKENR
APC,CDC20,FZR1
0.9758
More...
Q86X24
HORMA domain-containing protein 1
DEG_APCC_KENBOX_2
354:358
SKENR
APC,CDC20,FZR1
0.9971
More...
Q9HCZ1
Zinc finger protein 334
DEG_APCC_KENBOX_2
155:159
SKENR
APC,CDC20,FZR1
0.9989
More...