DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VFTSS
Uniprot ID:
P08779
Source protein:
Keratin, type I cytoskeletal 16
Source gene:
KRT16
Class:
DEG_SPOP_SBC_1
Location:
443:447
E3 ligase:
SPOP
DEGRON score:
0.9648
ASA_SCORE:
84.66
COIL:
0.6714
CONS_SCORE:
0.3436
DSS_SCORE:
0.5612
HELIX:
0.0256
FCONS_SCORE:
0.7706
RIG_SCORE:
0.6388
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R453C
TCGA-22-5479
LUSC
TCGA
VFTSS
DEG_SPOP_SBC_1
0.1667
p.R453C
TCGA-DX-A3LS
SARC
TCGA
VFTSS
DEG_SPOP_SBC_1
0.1667
p.R453C
DO27287
LUSC
ICGC
VFTSS
DEG_SPOP_SBC_1
0.1667
p.R453C
DO219965
SARC
ICGC
VFTSS
DEG_SPOP_SBC_1
0.1667
p.S451L
TCGA-AA-3977
COAD
TCGA
VFTSS
DEG_SPOP_SBC_1
0.6667
p.S451L
DO8730
COAD
ICGC
VFTSS
DEG_SPOP_SBC_1
0.6667
p.S437F
TCGA-AX-A1CE
UCEC
TCGA
VFTSS
DEG_SPOP_SBC_1
0.1667
p.S437F
DO42280
UCEC
ICGC
VFTSS
DEG_SPOP_SBC_1
0.1667
p.P457H
TCGA-B7-A5TI
STAD
TCGA
VFTSS
DEG_SPOP_SBC_1
0.0556
p.P457H
DO222328
STAD
ICGC
VFTSS
DEG_SPOP_SBC_1
0.0556
p.E442D
TCGA-D3-A2JP
SKCM
TCGA
VFTSS
DEG_SPOP_SBC_1
0.3056
p.E442D
DO47407
SKCM
ICGC
VFTSS
DEG_SPOP_SBC_1
0.3056
p.S450P
TCGA-EO-A3KX
UCEC
TCGA
VFTSS
DEG_SPOP_SBC_1
0.6944
p.S450P
DO219774
UCEC
ICGC
VFTSS
DEG_SPOP_SBC_1
0.6944
p.E442K
DO220851
MELA
ICGC
VFTSS
DEG_SPOP_SBC_1
0.3056
p.R441C
DO27919
ORCA
ICGC
VFTSS
DEG_SPOP_SBC_1
0.2778
p.R441C
SIDM00223
Small Cell Lung Carcinoma
GDSC
VFTSS
DEG_SPOP_SBC_1
0.2778
p.R441C
ACH-002144
Lung Cancer
CCLE
VFTSS
DEG_SPOP_SBC_1
0.2778
p.R441C
IST-SL1
lung
COSMIC
VFTSS
DEG_SPOP_SBC_1
0.2778
p.G435D
DO229211
THCA
ICGC
VFTSS
DEG_SPOP_SBC_1
0.1111
p.G435D
DO41199
UCEC
ICGC
VFTSS
DEG_SPOP_SBC_1
0.1111
p.S448L
SIDM01138
Pancreatic Carcinoma
GDSC
VFTSS
DEG_SPOP_SBC_1
0.3056
p.S448L
PANC-03-27
pancreas
COSMIC
VFTSS
DEG_SPOP_SBC_1
0.3056
p.S448W
SIDM01318
Hepatocellular Carcinoma
GDSC
VFTSS
DEG_SPOP_SBC_1
0.3056
p.S448W
ACH-001318
Liver Cancer
CCLE
VFTSS
DEG_SPOP_SBC_1
0.3056
p.Q436L
SIDM01448
Head and Neck Carcinoma
GDSC
VFTSS
DEG_SPOP_SBC_1
0.1389
p.Q436L
ACH-000500
Head and Neck Cancer
CCLE
VFTSS
DEG_SPOP_SBC_1
0.1389
p.T445P
ACH-000989
Colon/Colorectal Cancer
CCLE
VFTSS
DEG_SPOP_SBC_1
0.7031
p.S451W
D-283MED
central_nervous_system
COSMIC
VFTSS
DEG_SPOP_SBC_1
0.6667
Drug responses associated with KRT16 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VFTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P08779
Keratin, type I cytoskeletal 16
DEG_SPOP_SBC_1
443:447
VFTSS
SPOP
0.9648
More...
Q2M1Z3
Rho GTPase-activating protein 31
DEG_SPOP_SBC_1
465:469
VFTSS
SPOP
0.8674
More...
Q9ULE0
Protein WWC3
DEG_SPOP_SBC_1
727:731
VFTSS
SPOP
0.9576
More...
A5PL33
Protein KRBA1
DEG_SPOP_SBC_1
573:577
VFTSS
SPOP
0.85
More...