DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VKSTS
Uniprot ID:
Q8N5R6
Source protein:
Coiled-coil domain-containing protein 33
Source gene:
CCDC33
Class:
DEG_SPOP_SBC_1
Location:
265:269
E3 ligase:
SPOP
DEGRON score:
0.7639
ASA_SCORE:
59.9
COIL:
0.5316
CONS_SCORE:
0.4415
DSS_SCORE:
0.505
HELIX:
0.0256
FCONS_SCORE:
1.0402
RIG_SCORE:
0.7656
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R275Q
TCGA-97-A4M5
LUAD
TCGA
VKSTS
DEG_SPOP_SBC_1
0.1667
p.E262D
TCGA-AP-A0LM
UCEC
TCGA
VKSTS
DEG_SPOP_SBC_1
0.25
p.E262D
DO229006
LICA
ICGC
VKSTS
DEG_SPOP_SBC_1
0.25
p.E262D
DO43306
UCEC
ICGC
VKSTS
DEG_SPOP_SBC_1
0.25
p.P261T
TCGA-AP-A1DK
UCEC
TCGA
VKSTS
DEG_SPOP_SBC_1
0.2222
p.P261T
DO42033
UCEC
ICGC
VKSTS
DEG_SPOP_SBC_1
0.2222
p.F272S
TCGA-BR-6458
STAD
TCGA
VKSTS
DEG_SPOP_SBC_1
0.3611
p.F272S
DO38296
STAD
ICGC
VKSTS
DEG_SPOP_SBC_1
0.3611
p.D276Y
TCGA-FI-A2D5
UCEC
TCGA
VKSTS
DEG_SPOP_SBC_1
0.1389
p.G258V
TCGA-FS-A1ZN
SKCM
TCGA
VKSTS
DEG_SPOP_SBC_1
0.1389
p.G258V
DO38165
SKCM
ICGC
VKSTS
DEG_SPOP_SBC_1
0.1389
p.R275P
TCGA-H7-A6C4
HNSC
TCGA
VKSTS
DEG_SPOP_SBC_1
0.1667
p.S276I
DO229026
LICA
ICGC
VKSTS
DEG_SPOP_SBC_1
0.1389
p.H263N
DO26806
LUSC
ICGC
VKSTS
DEG_SPOP_SBC_1
0.2778
p.W260R
DO26516
LUSC
ICGC
VKSTS
DEG_SPOP_SBC_1
0.1944
p.P259S
DO27053
LUSC
ICGC
VKSTS
DEG_SPOP_SBC_1
0.1667
p.A272T
DO228253
MALY
ICGC
VKSTS
DEG_SPOP_SBC_1
0.3611
p.D255N
DO222837
MELA
ICGC
VKSTS
DEG_SPOP_SBC_1
0.0556
p.K272M
DO48665
SKCM
ICGC
VKSTS
DEG_SPOP_SBC_1
0.3611
p.E257K
DO48665
SKCM
ICGC
VKSTS
DEG_SPOP_SBC_1
0.1111
p.D274N
PF-382
haematopoietic_and_lymphoid_tissue
COSMIC
VKSTS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with CCDC33 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O94964
Protein SOGA1
DEG_SPOP_SBC_1
1127:1131
VKSTS
SPOP
0.9469
More...
Q7Z6E9
E3 ubiquitin-protein ligase RBBP6
DEG_SPOP_SBC_1
80:84
VKSTS
SPOP
0.9745
More...
Q9Y462
Zinc finger protein 711
DEG_SPOP_SBC_1
196:200
VKSTS
SPOP
0.9584
More...
Q8N5R6
Coiled-coil domain-containing protein 33
DEG_SPOP_SBC_1
265:269
VKSTS
SPOP
0.7639
More...