DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VKTST
Uniprot ID:
A4UGR9
Source protein:
Xin actin-binding repeat-containing protein 2
Source gene:
XIRP2
Class:
DEG_SPOP_SBC_1
Location:
1274:1278
E3 ligase:
SPOP
DEGRON score:
0.9434
ASA_SCORE:
73.52
COIL:
0.376
CONS_SCORE:
0.8961
DSS_SCORE:
0.3306
HELIX:
0.0328
FCONS_SCORE:
1.1266
RIG_SCORE:
0.7969
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G1270E
TCGA-21-1079
LUSC
TCGA
VKTST
DEG_SPOP_SBC_1
0.2222
p.G1270E
DO26846
LUSC
ICGC
VKTST
DEG_SPOP_SBC_1
0.2222
p.D1271N
TCGA-3N-A9WC
SKCM
TCGA
VKTST
DEG_SPOP_SBC_1
0.3611
p.D1271N
DO51234
SKCM
ICGC
VKTST
DEG_SPOP_SBC_1
0.3611
p.E1280V
TCGA-60-2723
LUSC
TCGA
VKTST
DEG_SPOP_SBC_1
0.2778
p.E1280V
DO27152
LUSC
ICGC
VKTST
DEG_SPOP_SBC_1
0.2778
p.S1283Y
TCGA-AP-A059
UCEC
TCGA
VKTST
DEG_SPOP_SBC_1
0.6389
p.S1283Y
TCGA-CA-6718
COAD
TCGA
VKTST
DEG_SPOP_SBC_1
0.6389
p.S1283Y
TCGA-EO-A3B0
UCEC
TCGA
VKTST
DEG_SPOP_SBC_1
0.6389
p.S1283Y
DO7801
COAD
ICGC
VKTST
DEG_SPOP_SBC_1
0.6389
p.S1283Y
DO219773
UCEC
ICGC
VKTST
DEG_SPOP_SBC_1
0.6389
p.S1283Y
DO41361
UCEC
ICGC
VKTST
DEG_SPOP_SBC_1
0.6389
p.R1273I
TCGA-AR-A250
BRCA
TCGA
VKTST
DEG_SPOP_SBC_1
0.3056
p.R1273I
DO1802
BRCA
ICGC
VKTST
DEG_SPOP_SBC_1
0.3056
p.I1267R
TCGA-BR-4361
STAD
TCGA
VKTST
DEG_SPOP_SBC_1
0.1389
p.I1267R
DO38887
STAD
ICGC
VKTST
DEG_SPOP_SBC_1
0.1389
p.G1270V
TCGA-D3-A2JH
SKCM
TCGA
VKTST
DEG_SPOP_SBC_1
0.2222
p.G1270V
DO47263
SKCM
ICGC
VKTST
DEG_SPOP_SBC_1
0.2222
p.K1274N
TCGA-D3-A8GM
SKCM
TCGA
VKTST
DEG_SPOP_SBC_1
0.6918
p.K1274N
DO50288
SKCM
ICGC
VKTST
DEG_SPOP_SBC_1
0.6918
p.L1284I
TCGA-E9-A243
BRCA
TCGA
VKTST
DEG_SPOP_SBC_1
0.1667
p.L1284I
DO4803
BRCA
ICGC
VKTST
DEG_SPOP_SBC_1
0.1667
p.S1283F
TCGA-FR-A8YC
SKCM
TCGA
VKTST
DEG_SPOP_SBC_1
0.6389
p.S1283F
TCGA-FS-A4F9
SKCM
TCGA
VKTST
DEG_SPOP_SBC_1
0.6389
p.S1283F
DO50301
SKCM
ICGC
VKTST
DEG_SPOP_SBC_1
0.6389
p.S1283F
DO38069
SKCM
ICGC
VKTST
DEG_SPOP_SBC_1
0.6389
p.F1277S
TCGA-Z2-A8RT
SKCM
TCGA
VKTST
DEG_SPOP_SBC_1
0.7982
p.F1277S
DO51301
SKCM
ICGC
VKTST
DEG_SPOP_SBC_1
0.7982
p.G1269C
DO234151
ESAD
ICGC
VKTST
DEG_SPOP_SBC_1
0.1944
p.C1276F
DO229028
LICA
ICGC
VKTST
DEG_SPOP_SBC_1
0.7108
p.F1282S
DO50957
LICA
ICGC
VKTST
DEG_SPOP_SBC_1
0.2222
p.D1285N
SIDM00727
Non-Small Cell Lung Carcinoma
GDSC
VKTST
DEG_SPOP_SBC_1
0.5833
p.D1285N
ACH-000951
Lung Cancer
CCLE
VKTST
DEG_SPOP_SBC_1
0.5833
p.D1285N
NCI-H2342
lung
COSMIC
VKTST
DEG_SPOP_SBC_1
0.5833
p.T1265I
SIDM00863
Burkitt's Lymphoma
GDSC
VKTST
DEG_SPOP_SBC_1
0.5278
p.E1280D
SIDM01611
Endometrial Carcinoma
GDSC
VKTST
DEG_SPOP_SBC_1
0.2778
p.R1275Q
HCC2998
large_intestine
COSMIC
VKTST
DEG_SPOP_SBC_1
0.7329
p.R1275Q
IGR-1
skin
COSMIC
VKTST
DEG_SPOP_SBC_1
0.7329
p.T1278S
DU-145
prostate
COSMIC
VKTST
DEG_SPOP_SBC_1
0.6005
p.T1276A
SNU-423
liver
COSMIC
VKTST
DEG_SPOP_SBC_1
0.7139
Drug responses associated with XIRP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A4UGR9
Xin actin-binding repeat-containing protein 2
DEG_SPOP_SBC_1
1274:1278
VKTST
SPOP
0.9434
More...
O60293
Zinc finger C3H1 domain-containing protein
DEG_SPOP_SBC_1
411:415
VKTST
SPOP
0.9877
More...
Q8WWI1
LIM domain only protein 7
DEG_SPOP_SBC_1
1574:1578
VKTST
SPOP
0.975
More...
Q9H799
Ciliogenesis and planar polarity effector 1
DEG_SPOP_SBC_1
1777:1781
VKTST
SPOP
0.6764
More...