DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VKTST
Uniprot ID:
Q8WWI1
Source protein:
LIM domain only protein 7
Source gene:
LMO7
Class:
DEG_SPOP_SBC_1
Location:
1574:1578
E3 ligase:
SPOP
DEGRON score:
0.975
ASA_SCORE:
98.62
COIL:
0.93
CONS_SCORE:
0.2557
DSS_SCORE:
0.6809
HELIX:
0.0216
FCONS_SCORE:
0.8944
RIG_SCORE:
0.5993
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.H1587R
SIDM00183
Small Cell Lung Carcinoma
GDSC
VKTST
DEG_SPOP_SBC_1
0.0833
p.H1587R
SIDM01648
Non-Cancerous
GDSC
VKTST
DEG_SPOP_SBC_1
0.0833
p.L1580P
SIDM01088
Endometrial Carcinoma
GDSC
VKTST
DEG_SPOP_SBC_1
0.2778
p.L1580P
RL95-2
endometrium
COSMIC
VKTST
DEG_SPOP_SBC_1
0.2778
p.A1574T
SIDM00214
Colorectal Carcinoma
GDSC
VKTST
DEG_SPOP_SBC_1
0.7139
p.A1574T
SNU-407
large_intestine
COSMIC
VKTST
DEG_SPOP_SBC_1
0.7139
p.H1587Y
SIDM00217
Colorectal Carcinoma
GDSC
VKTST
DEG_SPOP_SBC_1
0.0833
p.H1587Y
SNU-1040
large_intestine
COSMIC
VKTST
DEG_SPOP_SBC_1
0.0833
p.I1568F
NCI-H650
lung
COSMIC
VKTST
DEG_SPOP_SBC_1
0.1667
Drug responses associated with LMO7 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A4UGR9
Xin actin-binding repeat-containing protein 2
DEG_SPOP_SBC_1
1274:1278
VKTST
SPOP
0.9434
More...
O60293
Zinc finger C3H1 domain-containing protein
DEG_SPOP_SBC_1
411:415
VKTST
SPOP
0.9877
More...
Q8WWI1
LIM domain only protein 7
DEG_SPOP_SBC_1
1574:1578
VKTST
SPOP
0.975
More...
Q9H799
Ciliogenesis and planar polarity effector 1
DEG_SPOP_SBC_1
1777:1781
VKTST
SPOP
0.6764
More...