DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VMSSS
Uniprot ID:
P49848
Source protein:
Transcription initiation factor TFIID subunit 6
Source gene:
TAF6
Class:
DEG_SPOP_SBC_1
Location:
540:544
E3 ligase:
SPOP
DEGRON score:
0.9875
ASA_SCORE:
79.02
COIL:
0.7788
CONS_SCORE:
0.3567
DSS_SCORE:
0.586
HELIX:
0.013
FCONS_SCORE:
0.9805
RIG_SCORE:
0.6605
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P547H
TCGA-79-5596
LUSC
TCGA
VMSSS
DEG_SPOP_SBC_1
0.25
p.R539H
TCGA-B5-A3FC
UCEC
TCGA
VMSSS
DEG_SPOP_SBC_1
0.3056
p.R539H
DO41871
UCEC
ICGC
VMSSS
DEG_SPOP_SBC_1
0.3056
p.P553S
TCGA-CR-6484
HNSC
TCGA
VMSSS
DEG_SPOP_SBC_1
0.0833
p.P553S
DO15206
HNSC
ICGC
VMSSS
DEG_SPOP_SBC_1
0.0833
p.R539C
TCGA-QQ-A8VF
SARC
TCGA
VMSSS
DEG_SPOP_SBC_1
0.3056
p.P548Q
DO228948
LICA
ICGC
VMSSS
DEG_SPOP_SBC_1
0.2222
p.V540I
DO33043
PACA
ICGC
VMSSS
DEG_SPOP_SBC_1
0.7076
p.P535Q
DO220077
SARC
ICGC
VMSSS
DEG_SPOP_SBC_1
0.1944
p.G537D
DO229229
THCA
ICGC
VMSSS
DEG_SPOP_SBC_1
0.3611
p.A551T
SIDM00124
Kidney Carcinoma
GDSC
VMSSS
DEG_SPOP_SBC_1
0.1389
p.A551T
A498
kidney
COSMIC
VMSSS
DEG_SPOP_SBC_1
0.1389
p.P534A
ACH-000818
Breast Cancer
CCLE
VMSSS
DEG_SPOP_SBC_1
0.1667
p.S546R
ACH-000964
Leukemia
CCLE
VMSSS
DEG_SPOP_SBC_1
0.2778
p.S543L
ACH-000964
Leukemia
CCLE
VMSSS
DEG_SPOP_SBC_1
0.7667
Drug responses associated with TAF6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VMSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P49848
Transcription initiation factor TFIID subunit 6
DEG_SPOP_SBC_1
540:544
VMSSS
SPOP
0.9875
More...
Q68DE3
Basic helix-loop-helix domain-containing protein USF3
DEG_SPOP_SBC_1
676:680
VMSSS
SPOP
0.9741
More...
Q8NF50
Dedicator of cytokinesis protein 8
DEG_SPOP_SBC_1
900:904
VMSSS
SPOP
0.99
More...
Q9H0E3
Histone deacetylase complex subunit SAP130
DEG_SPOP_SBC_1
239:243
VMSSS
SPOP
0.5358
More...