DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VMSSS
Uniprot ID:
Q9H0E3
Source protein:
Histone deacetylase complex subunit SAP130
Source gene:
SAP130
Class:
DEG_SPOP_SBC_1
Location:
239:243
E3 ligase:
SPOP
DEGRON score:
0.5358
ASA_SCORE:
92.36
COIL:
0.9118
CONS_SCORE:
0.513
DSS_SCORE:
0.3626
HELIX:
0.0462
FCONS_SCORE:
0.9847
RIG_SCORE:
0.6904
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R232Q
TCGA-AP-A056
UCEC
TCGA
VMSSS
DEG_SPOP_SBC_1
0.1389
p.R232Q
DO43971
UCEC
ICGC
VMSSS
DEG_SPOP_SBC_1
0.1389
p.A237V
TCGA-DI-A1BU
UCEC
TCGA
VMSSS
DEG_SPOP_SBC_1
0.2778
p.A237V
DO42023
UCEC
ICGC
VMSSS
DEG_SPOP_SBC_1
0.2778
p.G233C
TCGA-EE-A183
SKCM
TCGA
VMSSS
DEG_SPOP_SBC_1
0.1667
p.G233C
DO37715
SKCM
ICGC
VMSSS
DEG_SPOP_SBC_1
0.1667
p.H229Y
SIDM00216
Colorectal Carcinoma
GDSC
VMSSS
DEG_SPOP_SBC_1
0.0556
p.A235V
ACH-000989
Colon/Colorectal Cancer
CCLE
VMSSS
DEG_SPOP_SBC_1
0.2222
p.A235V
SNU-175
large_intestine
COSMIC
VMSSS
DEG_SPOP_SBC_1
0.2222
p.I243L
ACH-001560
Lung Cancer
CCLE
VMSSS
DEG_SPOP_SBC_1
0.7174
p.R250W
ACH-002097
Skin Cancer
CCLE
VMSSS
DEG_SPOP_SBC_1
0.1389
p.R250W
CP66-MEL
skin
COSMIC
VMSSS
DEG_SPOP_SBC_1
0.1389
Drug responses associated with SAP130 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VMSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P49848
Transcription initiation factor TFIID subunit 6
DEG_SPOP_SBC_1
540:544
VMSSS
SPOP
0.9875
More...
Q68DE3
Basic helix-loop-helix domain-containing protein USF3
DEG_SPOP_SBC_1
676:680
VMSSS
SPOP
0.9741
More...
Q8NF50
Dedicator of cytokinesis protein 8
DEG_SPOP_SBC_1
900:904
VMSSS
SPOP
0.99
More...
Q9H0E3
Histone deacetylase complex subunit SAP130
DEG_SPOP_SBC_1
239:243
VMSSS
SPOP
0.5358
More...