DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VRTTT
Uniprot ID:
Q4ZHG4
Source protein:
Fibronectin type III domain-containing protein 1
Source gene:
FNDC1
Class:
DEG_SPOP_SBC_1
Location:
1491:1495
E3 ligase:
SPOP
DEGRON score:
0.9899
ASA_SCORE:
110.46
COIL:
0.9676
CONS_SCORE:
0.4307
DSS_SCORE:
0.8266
HELIX:
0.0176
FCONS_SCORE:
0.6129
RIG_SCORE:
0.7345
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1492Q
TCGA-AA-A010
COAD
TCGA
VRTTT
DEG_SPOP_SBC_1
0.6218
p.R1481H
TCGA-AX-A3FT
UCEC
TCGA
VRTTT
DEG_SPOP_SBC_1
0.0556
p.T1495M
TCGA-D1-A167
UCEC
TCGA
VRTTT
DEG_SPOP_SBC_1
0.7423
p.T1495M
SIDM01163
Non-Small Cell Lung Carcinoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.7423
p.T1495M
SIDM00100
Mesothelioma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.7423
p.R1486H
TCGA-DM-A1HB
COAD
TCGA
VRTTT
DEG_SPOP_SBC_1
0.1944
p.R1486H
SIDM00683
Prostate Carcinoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.1944
p.R1496W
TCGA-G4-6293
COAD
TCGA
VRTTT
DEG_SPOP_SBC_1
0.3056
p.R1496W
SIDM00613
Glioblastoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.3056
p.R1486C
TCGA-NH-A50V
COAD
TCGA
VRTTT
DEG_SPOP_SBC_1
0.1944
p.R1486C
SIDM01199
Hepatocellular Carcinoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.1944
p.R1486C
SIDM00607
Glioblastoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.1944
p.R1486C
SIDM01005
Acute Myeloid Leukemia
GDSC
VRTTT
DEG_SPOP_SBC_1
0.1944
p.R1486C
SIDM00358
Gastric Carcinoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.1944
p.R1486C
SIDM00252
Biliary Tract Carcinoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.1944
p.R1486C
SIDM01782
Oral Cavity Carcinoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.1944
p.V1496D
DO227470
BRCA
ICGC
VRTTT
DEG_SPOP_SBC_1
0.3056
p.E1493D
DO231196
LUSC
ICGC
VRTTT
DEG_SPOP_SBC_1
0.6758
p.V1496I
DO227858
PBCA
ICGC
VRTTT
DEG_SPOP_SBC_1
0.3056
p.V1496I
DO51761
STAD
ICGC
VRTTT
DEG_SPOP_SBC_1
0.3056
p.V1496I
DO42113
UCEC
ICGC
VRTTT
DEG_SPOP_SBC_1
0.3056
p.V1496I
DO41199
UCEC
ICGC
VRTTT
DEG_SPOP_SBC_1
0.3056
p.G1482D
DO41572
UCEC
ICGC
VRTTT
DEG_SPOP_SBC_1
0.0833
Drug responses associated with FNDC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q4ZHG4
Fibronectin type III domain-containing protein 1
DEG_SPOP_SBC_1
1491:1495
VRTTT
SPOP
0.9899
More...
Q96D05
Protein FAM241B
DEG_SPOP_SBC_1
18:22
VRTTT
SPOP
0.7851
More...
Q9NRF2
SH2B adapter protein 1
DEG_SPOP_SBC_1
329:333
VRTTT
SPOP
0.6499
More...
Q8N1P7
Beta/gamma crystallin domain-containing protein 2
DEG_SPOP_SBC_1
178:182
VRTTT
SPOP
0.7256
More...
Q96KF7
Small integral membrane protein 8
DEG_SPOP_SBC_1
28:32
VRTTT
SPOP
0.6411
More...