DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CPH
CGC
Degron:
VRTTT
Uniprot ID:
Q96KF7
Source protein:
Small integral membrane protein 8
Source gene:
SMIM8
Class:
DEG_SPOP_SBC_1
Location:
28:32
E3 ligase:
SPOP
DEGRON score:
0.6411
ASA_SCORE:
50.52
COIL:
0.5722
CONS_SCORE:
0.9332
DSS_SCORE:
0.3935
HELIX:
0.3326
FCONS_SCORE:
1.0318
RIG_SCORE:
0.8042
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R29H
TCGA-39-5037
LUSC
TCGA
VRTTT
DEG_SPOP_SBC_1
0.7133
p.R29H
DO27429
LUSC
ICGC
VRTTT
DEG_SPOP_SBC_1
0.7133
p.R29H
SIDM00654
Small Cell Lung Carcinoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.7133
p.R29H
SIDM01608
Endometrial Carcinoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.7133
p.R29H
ACH-000866
Lung Cancer
CCLE
VRTTT
DEG_SPOP_SBC_1
0.7133
p.R29H
ACH-000990
Endometrial/Uterine Cancer
CCLE
VRTTT
DEG_SPOP_SBC_1
0.7133
p.R29H
NCI-H1048
lung
COSMIC
VRTTT
DEG_SPOP_SBC_1
0.7133
p.R35H
TCGA-AP-A1DV
UCEC
TCGA
VRTTT
DEG_SPOP_SBC_1
0.25
p.R35H
DO43186
UCEC
ICGC
VRTTT
DEG_SPOP_SBC_1
0.25
p.L41P
TCGA-BP-5201
KIRC
TCGA
VRTTT
DEG_SPOP_SBC_1
0.0833
p.L41P
DO17206
KIRC
ICGC
VRTTT
DEG_SPOP_SBC_1
0.0833
p.R35C
TCGA-BR-8487
STAD
TCGA
VRTTT
DEG_SPOP_SBC_1
0.25
p.R35C
TCGA-EE-A2MJ
SKCM
TCGA
VRTTT
DEG_SPOP_SBC_1
0.25
p.R35C
TCGA-IB-7651
PAAD
TCGA
VRTTT
DEG_SPOP_SBC_1
0.25
p.R35C
DO46657
PAAD
ICGC
VRTTT
DEG_SPOP_SBC_1
0.25
p.R35C
DO38099
SKCM
ICGC
VRTTT
DEG_SPOP_SBC_1
0.25
p.R35C
DO47867
STAD
ICGC
VRTTT
DEG_SPOP_SBC_1
0.25
p.R35C
ACH-001333
Cervical Cancer
CCLE
VRTTT
DEG_SPOP_SBC_1
0.25
p.R35C
ACH-002273
Leukemia
CCLE
VRTTT
DEG_SPOP_SBC_1
0.25
p.E40D
TCGA-G6-A8L6
KIRC
TCGA
VRTTT
DEG_SPOP_SBC_1
0.1111
p.E40D
DO50649
KIRC
ICGC
VRTTT
DEG_SPOP_SBC_1
0.1111
p.Q21P
TCGA-HE-A5NH
KIRP
TCGA
VRTTT
DEG_SPOP_SBC_1
0.1389
p.Q21P
DO44485
KIRP
ICGC
VRTTT
DEG_SPOP_SBC_1
0.1389
p.G24V
TCGA-HU-8602
STAD
TCGA
VRTTT
DEG_SPOP_SBC_1
0.2222
p.G24V
DO47829
STAD
ICGC
VRTTT
DEG_SPOP_SBC_1
0.2222
p.E19Q
SIDM01117
Small Cell Lung Carcinoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.0833
p.E19Q
ACH-002176
Lung Cancer
CCLE
VRTTT
DEG_SPOP_SBC_1
0.0833
p.E19Q
NCI-H748
lung
COSMIC
VRTTT
DEG_SPOP_SBC_1
0.0833
p.V28M
SIDM01577
Plasma Cell Myeloma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.7208
p.V28M
ACH-000889
Myeloma
CCLE
VRTTT
DEG_SPOP_SBC_1
0.7208
Drug responses associated with SMIM8 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q4ZHG4
Fibronectin type III domain-containing protein 1
DEG_SPOP_SBC_1
1491:1495
VRTTT
SPOP
0.9899
More...
Q96D05
Protein FAM241B
DEG_SPOP_SBC_1
18:22
VRTTT
SPOP
0.7851
More...
Q9NRF2
SH2B adapter protein 1
DEG_SPOP_SBC_1
329:333
VRTTT
SPOP
0.6499
More...
Q8N1P7
Beta/gamma crystallin domain-containing protein 2
DEG_SPOP_SBC_1
178:182
VRTTT
SPOP
0.7256
More...
Q96KF7
Small integral membrane protein 8
DEG_SPOP_SBC_1
28:32
VRTTT
SPOP
0.6411
More...