DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VRTTT
Uniprot ID:
Q9NRF2
Source protein:
SH2B adapter protein 1
Source gene:
SH2B1
Class:
DEG_SPOP_SBC_1
Location:
329:333
E3 ligase:
SPOP
DEGRON score:
0.6499
ASA_SCORE:
64.8
COIL:
0.476
CONS_SCORE:
0.8105
DSS_SCORE:
0.4847
HELIX:
0.0136
FCONS_SCORE:
1.076
RIG_SCORE:
0.8058
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D328E
TCGA-17-Z036
LUAD
TCGA
VRTTT
DEG_SPOP_SBC_1
0.3056
p.A334D
TCGA-78-7150
LUAD
TCGA
VRTTT
DEG_SPOP_SBC_1
0.3056
p.A334D
DO24411
LUAD
ICGC
VRTTT
DEG_SPOP_SBC_1
0.3056
p.A334D
SIDM00190
Melanoma
GDSC
VRTTT
DEG_SPOP_SBC_1
0.3056
p.A334D
CP66-MEL
skin
COSMIC
VRTTT
DEG_SPOP_SBC_1
0.3056
p.R330W
TCGA-A8-A076
BRCA
TCGA
VRTTT
DEG_SPOP_SBC_1
0.7523
p.R330W
DO2617
BRCA
ICGC
VRTTT
DEG_SPOP_SBC_1
0.7523
p.R330W
DO222586
ESCA
ICGC
VRTTT
DEG_SPOP_SBC_1
0.7523
p.E341D
TCGA-AC-A23H
BRCA
TCGA
VRTTT
DEG_SPOP_SBC_1
0.1111
p.E341D
TCGA-B0-5104
KIRC
TCGA
VRTTT
DEG_SPOP_SBC_1
0.1111
p.S324C
TCGA-EK-A3GK
CESC
TCGA
VRTTT
DEG_SPOP_SBC_1
0.1944
p.S324C
DO49964
CESC
ICGC
VRTTT
DEG_SPOP_SBC_1
0.1944
p.D339H
TCGA-G2-A2EJ
BLCA
TCGA
VRTTT
DEG_SPOP_SBC_1
0.1667
p.D339H
DO554
BLCA
ICGC
VRTTT
DEG_SPOP_SBC_1
0.1667
p.R330G
TCGA-K4-A4AC
BLCA
TCGA
VRTTT
DEG_SPOP_SBC_1
0.6457
p.R330G
DO542
BLCA
ICGC
VRTTT
DEG_SPOP_SBC_1
0.6457
p.T331I
DO224744
COCA
ICGC
VRTTT
DEG_SPOP_SBC_1
0.7078
p.R320Q
ACH-000895
Colon/Colorectal Cancer
CCLE
VRTTT
DEG_SPOP_SBC_1
0.5278
p.R320Q
CL-34
large_intestine
COSMIC
VRTTT
DEG_SPOP_SBC_1
0.5278
p.A326V
LCLC-97TM1
lung
COSMIC
VRTTT
DEG_SPOP_SBC_1
0.25
Drug responses associated with SH2B1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q4ZHG4
Fibronectin type III domain-containing protein 1
DEG_SPOP_SBC_1
1491:1495
VRTTT
SPOP
0.9899
More...
Q96D05
Protein FAM241B
DEG_SPOP_SBC_1
18:22
VRTTT
SPOP
0.7851
More...
Q9NRF2
SH2B adapter protein 1
DEG_SPOP_SBC_1
329:333
VRTTT
SPOP
0.6499
More...
Q8N1P7
Beta/gamma crystallin domain-containing protein 2
DEG_SPOP_SBC_1
178:182
VRTTT
SPOP
0.7256
More...
Q96KF7
Small integral membrane protein 8
DEG_SPOP_SBC_1
28:32
VRTTT
SPOP
0.6411
More...