Summary ?
GeneID126
SymbolADH1C
SynonymsADH3
Descriptionalcohol dehydrogenase 1C (class I), gamma polypeptide
ReferenceMIM:103730|HGNC:HGNC:251|Ensembl:ENSG00000248144|HPRD:00066|Vega:OTTHUMG00000161422
Gene typeprotein-coding
Map location4q23
Pascal p-value0.218
Fetal beta-0.272
eGenePutamen basal ganglia

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS
PMID:cooccurHigh-throughput literature-searchSystematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included.
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: schizophrenia,schizophreniasClick to show details

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs17898924100250658ADH1CENSG00000248144.19.324E-70.0123526gtex_brain_putamen_basal
rs11544334100253708ADH1CENSG00000248144.19.033E-70.0120476gtex_brain_putamen_basal
rs12299784100256199ADH1CENSG00000248144.19.033E-70.0117985gtex_brain_putamen_basal
rs16620314100256793ADH1CENSG00000248144.19.033E-70.0117391gtex_brain_putamen_basal
rs16127354100258007ADH1CENSG00000248144.19.033E-70.0116177gtex_brain_putamen_basal
rs17898984100258336ADH1CENSG00000248144.19.033E-70.0115848gtex_brain_putamen_basal
rs14424794100258675ADH1CENSG00000248144.19.033E-70.0115509gtex_brain_putamen_basal
rs14424804100258681ADH1CENSG00000248144.19.033E-70.0115503gtex_brain_putamen_basal
rs17899004100258717ADH1CENSG00000248144.12.579E-60.0115467gtex_brain_putamen_basal
rs14424814100259047ADH1CENSG00000248144.11.013E-60.0115137gtex_brain_putamen_basal
rs16934564100259351ADH1CENSG00000248144.19.033E-70.0114833gtex_brain_putamen_basal
rs28512994100259618ADH1CENSG00000248144.19.298E-70.0114566gtex_brain_putamen_basal
rs16620604100259841ADH1CENSG00000248144.19.033E-70.0114343gtex_brain_putamen_basal
rs17899024100260171ADH1CENSG00000248144.19.033E-70.0114013gtex_brain_putamen_basal
rs16934764100260274ADH1CENSG00000248144.19.033E-70.0113910gtex_brain_putamen_basal
rs16620594100260378ADH1CENSG00000248144.19.033E-70.0113806gtex_brain_putamen_basal
rs6984100260789ADH1CENSG00000248144.19.033E-70.0113395gtex_brain_putamen_basal
rs22987554100261038ADH1CENSG00000248144.19.759E-70.0113146gtex_brain_putamen_basal
rs3738991054100261040ADH1CENSG00000248144.11.28E-60.0113144gtex_brain_putamen_basal
rs31140484100261216ADH1CENSG00000248144.19.033E-70.0112968gtex_brain_putamen_basal
rs1996190024100261576ADH1CENSG00000248144.18.334E-70.0112608gtex_brain_putamen_basal
rs557536214100261577ADH1CENSG00000248144.18.334E-70.0112607gtex_brain_putamen_basal
rs17899034100262041ADH1CENSG00000248144.19.033E-70.0112143gtex_brain_putamen_basal
rs16620584100262759ADH1CENSG00000248144.19.017E-70.0111425gtex_brain_putamen_basal
rs16934774100263062ADH1CENSG00000248144.19.033E-70.0111122gtex_brain_putamen_basal
rs17899064100263219ADH1CENSG00000248144.19.033E-70.0110965gtex_brain_putamen_basal
rs9040934100263247ADH1CENSG00000248144.19.033E-70.0110937gtex_brain_putamen_basal
rs9040944100263252ADH1CENSG00000248144.19.033E-70.0110932gtex_brain_putamen_basal
rs9040954100263383ADH1CENSG00000248144.19.033E-70.0110801gtex_brain_putamen_basal
rs16620574100263414ADH1CENSG00000248144.18.875E-70.0110770gtex_brain_putamen_basal
rs17899084100263417ADH1CENSG00000248144.19.033E-70.0110767gtex_brain_putamen_basal
rs9040964100263584ADH1CENSG00000248144.19.033E-70.0110600gtex_brain_putamen_basal
rs17899104100263715ADH1CENSG00000248144.18.989E-70.0110469gtex_brain_putamen_basal
rs16934804100263762ADH1CENSG00000248144.19.033E-70.0110422gtex_brain_putamen_basal
rs17899114100263778ADH1CENSG00000248144.19.033E-70.0110406gtex_brain_putamen_basal
rs16934814100263834ADH1CENSG00000248144.19.759E-70.0110350gtex_brain_putamen_basal
rs17899124100263942ADH1CENSG00000248144.15.429E-70.0110242gtex_brain_putamen_basal
rs16934824100263965ADH1CENSG00000248144.18.774E-70.0110219gtex_brain_putamen_basal
rs16314604100264620ADH1CENSG00000248144.19.033E-70.019564gtex_brain_putamen_basal
rs16934834100264946ADH1CENSG00000248144.18.737E-70.019238gtex_brain_putamen_basal
rs16934244100265236ADH1CENSG00000248144.19.022E-70.018948gtex_brain_putamen_basal
rs16254394100265325ADH1CENSG00000248144.19.033E-70.018859gtex_brain_putamen_basal
rs17899134100265348ADH1CENSG00000248144.18.976E-70.018836gtex_brain_putamen_basal
rs623072984100265550ADH1CENSG00000248144.19.033E-70.018634gtex_brain_putamen_basal
rs16934254100266112ADH1CENSG00000248144.19.033E-70.018072gtex_brain_putamen_basal
rs16934264100266330ADH1CENSG00000248144.19.033E-70.017854gtex_brain_putamen_basal
rs16620534100266583ADH1CENSG00000248144.19.033E-70.017601gtex_brain_putamen_basal
rs16620524100266635ADH1CENSG00000248144.19.033E-70.017549gtex_brain_putamen_basal
rs17899164100266696ADH1CENSG00000248144.19.033E-70.017488gtex_brain_putamen_basal
rs16934274100266827ADH1CENSG00000248144.19.033E-70.017357gtex_brain_putamen_basal
rs16934284100266931ADH1CENSG00000248144.11.096E-60.017253gtex_brain_putamen_basal
rs17899174100267164ADH1CENSG00000248144.19.033E-70.017020gtex_brain_putamen_basal
rs16620514100267239ADH1CENSG00000248144.19.033E-70.016945gtex_brain_putamen_basal
rs17899194100267719ADH1CENSG00000248144.19.033E-70.016465gtex_brain_putamen_basal
rs16934314100268049ADH1CENSG00000248144.19.033E-70.016135gtex_brain_putamen_basal
rs37628964100268131ADH1CENSG00000248144.12.656E-60.016053gtex_brain_putamen_basal
rs41475424100268553ADH1CENSG00000248144.12.656E-60.015631gtex_brain_putamen_basal
rs355005404100268753ADH1CENSG00000248144.11.422E-60.015431gtex_brain_putamen_basal
rs775956424100269259ADH1CENSG00000248144.11.473E-60.014925gtex_brain_putamen_basal
rs350819544100270818ADH1CENSG00000248144.19.033E-70.013366gtex_brain_putamen_basal
rs359207084100271008ADH1CENSG00000248144.19.331E-70.013176gtex_brain_putamen_basal
rs16292704100271306ADH1CENSG00000248144.19.033E-70.012878gtex_brain_putamen_basal
rs16620494100271849ADH1CENSG00000248144.19.033E-70.012335gtex_brain_putamen_basal
rs16620484100272032ADH1CENSG00000248144.19.214E-70.012152gtex_brain_putamen_basal
rs68468354100272147ADH1CENSG00000248144.12.642E-60.012037gtex_brain_putamen_basal
rs119368694100273173ADH1CENSG00000248144.12.656E-60.011011gtex_brain_putamen_basal
rs675122054100273368ADH1CENSG00000248144.11.751E-60.01816gtex_brain_putamen_basal
rs41475414100274157ADH1CENSG00000248144.12.656E-60.0127gtex_brain_putamen_basal
rs17899244100274286ADH1CENSG00000248144.19.033E-70.01-102gtex_brain_putamen_basal
rs16298384100274896ADH1CENSG00000248144.19.033E-70.01-712gtex_brain_putamen_basal
rs114998244100274983ADH1CENSG00000248144.12.666E-60.01-799gtex_brain_putamen_basal
rs25844534100275305ADH1CENSG00000248144.19.033E-70.01-1121gtex_brain_putamen_basal
rs17899254100275745ADH1CENSG00000248144.19.033E-70.01-1561gtex_brain_putamen_basal
rs16934694100275902ADH1CENSG00000248144.11.993E-60.01-1718gtex_brain_putamen_basal
rs114998264100276936ADH1CENSG00000248144.11.992E-70.01-2752gtex_brain_putamen_basal
rs100065454100277432ADH1CENSG00000248144.12.656E-60.01-3248gtex_brain_putamen_basal
rs24539804100277437ADH1CENSG00000248144.12.039E-60.01-3253gtex_brain_putamen_basal
rs2017206054100278004ADH1CENSG00000248144.19.698E-70.01-3820gtex_brain_putamen_basal
rs9809724100279247ADH1CENSG00000248144.19.033E-70.01-5063gtex_brain_putamen_basal
rs16934704100279489ADH1CENSG00000248144.19.033E-70.01-5305gtex_brain_putamen_basal
rs16620394100279684ADH1CENSG00000248144.18.964E-70.01-5500gtex_brain_putamen_basal
rs28513004100279824ADH1CENSG00000248144.19.033E-70.01-5640gtex_brain_putamen_basal
rs12345844100280041ADH1CENSG00000248144.19.112E-70.01-5857gtex_brain_putamen_basal
rs16620214100280107ADH1CENSG00000248144.19.033E-70.01-5923gtex_brain_putamen_basal
rs16620204100280110ADH1CENSG00000248144.19.033E-70.01-5926gtex_brain_putamen_basal
rs12354154100281159ADH1CENSG00000248144.18.93E-70.01-6975gtex_brain_putamen_basal
rs12298584100281634ADH1CENSG00000248144.17.815E-70.01-7450gtex_brain_putamen_basal
rs12298574100281708ADH1CENSG00000248144.18.72E-70.01-7524gtex_brain_putamen_basal
rs100311684100281893ADH1CENSG00000248144.12.656E-60.01-7709gtex_brain_putamen_basal
rs12298564100281905ADH1CENSG00000248144.19.033E-70.01-7721gtex_brain_putamen_basal
rs12298554100282295ADH1CENSG00000248144.19.033E-70.01-8111gtex_brain_putamen_basal
rs12298544100282550ADH1CENSG00000248144.19.033E-70.01-8366gtex_brain_putamen_basal
rs12298514100283825ADH1CENSG00000248144.19.033E-70.01-9641gtex_brain_putamen_basal
rs11544354100285148ADH1CENSG00000248144.12.221E-60.01-10964gtex_brain_putamen_basal
rs11544384100285887ADH1CENSG00000248144.11.668E-60.01-11703gtex_brain_putamen_basal
rs11544394100286233ADH1CENSG00000248144.16.081E-70.01-12049gtex_brain_putamen_basal
rs11544404100286447ADH1CENSG00000248144.19.005E-70.01-12263gtex_brain_putamen_basal
rs12299734100287178ADH1CENSG00000248144.19.314E-70.01-12994gtex_brain_putamen_basal
rs15839744100287812ADH1CENSG00000248144.19.671E-70.01-13628gtex_brain_putamen_basal
rs11544424100287849ADH1CENSG00000248144.11.42E-60.01-13665gtex_brain_putamen_basal
rs11544444100288089ADH1CENSG00000248144.19.9E-70.01-13905gtex_brain_putamen_basal
rs11544454100288521ADH1CENSG00000248144.11.033E-60.01-14337gtex_brain_putamen_basal
rs11544474100289034ADH1CENSG00000248144.11.089E-60.01-14850gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
KEGG GLYCOLYSIS GLUCONEOGENESIS 6241All SZGR 2.0 genes in this pathway
KEGG FATTY ACID METABOLISM 4229All SZGR 2.0 genes in this pathway
KEGG TYROSINE METABOLISM 4230All SZGR 2.0 genes in this pathway
KEGG RETINOL METABOLISM 6437All SZGR 2.0 genes in this pathway
KEGG METABOLISM OF XENOBIOTICS BY CYTOCHROME P450 7044All SZGR 2.0 genes in this pathway
KEGG DRUG METABOLISM CYTOCHROME P450 7247All SZGR 2.0 genes in this pathway
REACTOME BIOLOGICAL OXIDATIONS 13991All SZGR 2.0 genes in this pathway
REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS 7050All SZGR 2.0 genes in this pathway
REACTOME ETHANOL OXIDATION 109All SZGR 2.0 genes in this pathway
SENGUPTA NASOPHARYNGEAL CARCINOMA DN 349157All SZGR 2.0 genes in this pathway
VECCHI GASTRIC CANCER ADVANCED VS EARLY DN 13870All SZGR 2.0 genes in this pathway
DODD NASOPHARYNGEAL CARCINOMA UP 1821933All SZGR 2.0 genes in this pathway
GAUSSMANN MLL AF4 FUSION TARGETS G UP 238135All SZGR 2.0 genes in this pathway
RASHI RESPONSE TO IONIZING RADIATION 6 8454All SZGR 2.0 genes in this pathway
SCHAEFFER PROSTATE DEVELOPMENT 48HR UP 487286All SZGR 2.0 genes in this pathway
RICKMAN HEAD AND NECK CANCER E 8944All SZGR 2.0 genes in this pathway
KANG IMMORTALIZED BY TERT DN 10267All SZGR 2.0 genes in this pathway
BROWNE HCMV INFECTION 14HR DN 298200All SZGR 2.0 genes in this pathway
BURTON ADIPOGENESIS PEAK AT 0HR 6348All SZGR 2.0 genes in this pathway
MCDOWELL ACUTE LUNG INJURY DN 4833All SZGR 2.0 genes in this pathway
DURCHDEWALD SKIN CARCINOGENESIS UP 8847All SZGR 2.0 genes in this pathway
LEIN CHOROID PLEXUS MARKERS 10361All SZGR 2.0 genes in this pathway
GAVIN FOXP3 TARGETS CLUSTER P4 10062All SZGR 2.0 genes in this pathway
MARSON BOUND BY FOXP3 STIMULATED 1022619All SZGR 2.0 genes in this pathway
MARSON BOUND BY FOXP3 UNSTIMULATED 1229713All SZGR 2.0 genes in this pathway
MARTINEZ RB1 TARGETS DN 543317All SZGR 2.0 genes in this pathway
MARTINEZ TP53 TARGETS UP 602364All SZGR 2.0 genes in this pathway
MARTINEZ RB1 AND TP53 TARGETS UP 601369All SZGR 2.0 genes in this pathway
SARRIO EPITHELIAL MESENCHYMAL TRANSITION DN 154101All SZGR 2.0 genes in this pathway
IWANAGA CARCINOGENESIS BY KRAS PTEN DN 353226All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL UP 260174All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL CULTURED VS FRESH UP 425298All SZGR 2.0 genes in this pathway
YOSHIMURA MAPK8 TARGETS UP 1305895All SZGR 2.0 genes in this pathway
SWEET LUNG CANCER KRAS DN 435289All SZGR 2.0 genes in this pathway
CAIRO HEPATOBLASTOMA DN 267160All SZGR 2.0 genes in this pathway
CAIRO HEPATOBLASTOMA CLASSES DN 210141All SZGR 2.0 genes in this pathway
NAKAYAMA SOFT TISSUE TUMORS PCA2 DN 8051All SZGR 2.0 genes in this pathway
BROWNE HCMV INFECTION 2HR UP 3930All SZGR 2.0 genes in this pathway
LEE BMP2 TARGETS UP 745475All SZGR 2.0 genes in this pathway
SERVITJA ISLET HNF1A TARGETS DN 10971All SZGR 2.0 genes in this pathway
WANG MLL TARGETS 289188All SZGR 2.0 genes in this pathway