Gene Page: MCOLN3
Summary ?
| GeneID | 55283 |
| Symbol | MCOLN3 |
| Synonyms | TRP-ML3|TRPML3 |
| Description | mucolipin 3 |
| Reference | MIM:607400|HGNC:HGNC:13358|Ensembl:ENSG00000055732|HPRD:09585|Vega:OTTHUMG00000009955 |
| Gene type | protein-coding |
| Map location | 1p22.3 |
| Pascal p-value | 0.024 |
| eGene | Caudate basal ganglia Cortex Nucleus accumbens basal ganglia Putamen basal ganglia |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs34430554 | 1 | 85417546 | MCOLN3 | ENSG00000055732.8 | 1.424E-6 | 0 | 96636 | gtex_brain_putamen_basal |
| rs677476 | 1 | 85418307 | MCOLN3 | ENSG00000055732.8 | 1.13E-6 | 0 | 95875 | gtex_brain_putamen_basal |
| rs507465 | 1 | 85419676 | MCOLN3 | ENSG00000055732.8 | 1.347E-10 | 0 | 94506 | gtex_brain_putamen_basal |
| rs597630 | 1 | 85419947 | MCOLN3 | ENSG00000055732.8 | 1.354E-10 | 0 | 94235 | gtex_brain_putamen_basal |
| rs504504 | 1 | 85420044 | MCOLN3 | ENSG00000055732.8 | 2.341E-10 | 0 | 94138 | gtex_brain_putamen_basal |
| rs615161 | 1 | 85420493 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 93689 | gtex_brain_putamen_basal |
| rs473957 | 1 | 85421042 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 93140 | gtex_brain_putamen_basal |
| rs613190 | 1 | 85421131 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 93051 | gtex_brain_putamen_basal |
| rs472373 | 1 | 85421167 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 93015 | gtex_brain_putamen_basal |
| rs60969677 | 1 | 85421327 | MCOLN3 | ENSG00000055732.8 | 8.484E-15 | 0 | 92855 | gtex_brain_putamen_basal |
| rs632545 | 1 | 85422061 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 92121 | gtex_brain_putamen_basal |
| rs550766 | 1 | 85422378 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 91804 | gtex_brain_putamen_basal |
| rs645435 | 1 | 85422662 | MCOLN3 | ENSG00000055732.8 | 1.328E-10 | 0 | 91520 | gtex_brain_putamen_basal |
| rs522195 | 1 | 85423220 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 90962 | gtex_brain_putamen_basal |
| rs521435 | 1 | 85423264 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 90918 | gtex_brain_putamen_basal |
| rs498429 | 1 | 85423541 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 90641 | gtex_brain_putamen_basal |
| rs12129308 | 1 | 85423720 | MCOLN3 | ENSG00000055732.8 | 1.795E-12 | 0 | 90462 | gtex_brain_putamen_basal |
| rs673998 | 1 | 85424182 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 90000 | gtex_brain_putamen_basal |
| rs674182 | 1 | 85424479 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 89703 | gtex_brain_putamen_basal |
| rs674647 | 1 | 85424597 | MCOLN3 | ENSG00000055732.8 | 1.331E-10 | 0 | 89585 | gtex_brain_putamen_basal |
| rs515303 | 1 | 85425706 | MCOLN3 | ENSG00000055732.8 | 1.087E-6 | 0 | 88476 | gtex_brain_putamen_basal |
| rs600924 | 1 | 85426160 | MCOLN3 | ENSG00000055732.8 | 1.326E-10 | 0 | 88022 | gtex_brain_putamen_basal |
| rs597704 | 1 | 85426555 | MCOLN3 | ENSG00000055732.8 | 1.326E-10 | 0 | 87627 | gtex_brain_putamen_basal |
| rs397800524 | 1 | 85426571 | MCOLN3 | ENSG00000055732.8 | 1.326E-10 | 0 | 87611 | gtex_brain_putamen_basal |
| rs200610932 | 1 | 85426574 | MCOLN3 | ENSG00000055732.8 | 2.151E-6 | 0 | 87608 | gtex_brain_putamen_basal |
| rs2031480 | 1 | 85426664 | MCOLN3 | ENSG00000055732.8 | 1.798E-12 | 0 | 87518 | gtex_brain_putamen_basal |
| rs657309 | 1 | 85429584 | MCOLN3 | ENSG00000055732.8 | 1.339E-10 | 0 | 84598 | gtex_brain_putamen_basal |
| rs658658 | 1 | 85429890 | MCOLN3 | ENSG00000055732.8 | 3.47E-10 | 0 | 84292 | gtex_brain_putamen_basal |
| rs671852 | 1 | 85430522 | MCOLN3 | ENSG00000055732.8 | 1.343E-10 | 0 | 83660 | gtex_brain_putamen_basal |
| rs397707281 | 1 | 85430558 | MCOLN3 | ENSG00000055732.8 | 1.344E-10 | 0 | 83624 | gtex_brain_putamen_basal |
| rs4907015 | 1 | 85430710 | MCOLN3 | ENSG00000055732.8 | 1.824E-12 | 0 | 83472 | gtex_brain_putamen_basal |
| rs536609 | 1 | 85430851 | MCOLN3 | ENSG00000055732.8 | 1.345E-10 | 0 | 83331 | gtex_brain_putamen_basal |
| rs668263 | 1 | 85430875 | MCOLN3 | ENSG00000055732.8 | 1.345E-10 | 0 | 83307 | gtex_brain_putamen_basal |
| rs672202 | 1 | 85431710 | MCOLN3 | ENSG00000055732.8 | 1.35E-10 | 0 | 82472 | gtex_brain_putamen_basal |
| rs591772 | 1 | 85431824 | MCOLN3 | ENSG00000055732.8 | 1.271E-10 | 0 | 82358 | gtex_brain_putamen_basal |
| rs688208 | 1 | 85431839 | MCOLN3 | ENSG00000055732.8 | 4.663E-10 | 0 | 82343 | gtex_brain_putamen_basal |
| rs593721 | 1 | 85432505 | MCOLN3 | ENSG00000055732.8 | 1.355E-10 | 0 | 81677 | gtex_brain_putamen_basal |
| rs593745 | 1 | 85432517 | MCOLN3 | ENSG00000055732.8 | 1.357E-10 | 0 | 81665 | gtex_brain_putamen_basal |
| rs72431763 | 1 | 85433446 | MCOLN3 | ENSG00000055732.8 | 3.4E-11 | 0 | 80736 | gtex_brain_putamen_basal |
| rs12146119 | 1 | 85434536 | MCOLN3 | ENSG00000055732.8 | 1.854E-12 | 0 | 79646 | gtex_brain_putamen_basal |
| rs625045 | 1 | 85434613 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 79569 | gtex_brain_putamen_basal |
| rs199918812 | 1 | 85435393 | MCOLN3 | ENSG00000055732.8 | 3.916E-13 | 0 | 78789 | gtex_brain_putamen_basal |
| rs35302460 | 1 | 85435395 | MCOLN3 | ENSG00000055732.8 | 3.916E-13 | 0 | 78787 | gtex_brain_putamen_basal |
| rs654662 | 1 | 85435552 | MCOLN3 | ENSG00000055732.8 | 1.379E-10 | 0 | 78630 | gtex_brain_putamen_basal |
| rs654666 | 1 | 85435560 | MCOLN3 | ENSG00000055732.8 | 1.379E-10 | 0 | 78622 | gtex_brain_putamen_basal |
| rs640149 | 1 | 85435752 | MCOLN3 | ENSG00000055732.8 | 1.38E-10 | 0 | 78430 | gtex_brain_putamen_basal |
| rs11800103 | 1 | 85435975 | MCOLN3 | ENSG00000055732.8 | 1.866E-12 | 0 | 78207 | gtex_brain_putamen_basal |
| rs652272 | 1 | 85436118 | MCOLN3 | ENSG00000055732.8 | 7.884E-11 | 0 | 78064 | gtex_brain_putamen_basal |
| rs668860 | 1 | 85436462 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 77720 | gtex_brain_putamen_basal |
| rs574954 | 1 | 85436926 | MCOLN3 | ENSG00000055732.8 | 4.922E-11 | 0 | 77256 | gtex_brain_putamen_basal |
| rs541897 | 1 | 85438243 | MCOLN3 | ENSG00000055732.8 | 2.264E-10 | 0 | 75939 | gtex_brain_putamen_basal |
| rs589653 | 1 | 85439304 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 74878 | gtex_brain_putamen_basal |
| rs11799554 | 1 | 85440213 | MCOLN3 | ENSG00000055732.8 | 1.888E-12 | 0 | 73969 | gtex_brain_putamen_basal |
| rs532185 | 1 | 85440793 | MCOLN3 | ENSG00000055732.8 | 5.852E-9 | 0 | 73389 | gtex_brain_putamen_basal |
| rs600536 | 1 | 85441051 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 73131 | gtex_brain_putamen_basal |
| rs12140467 | 1 | 85441702 | MCOLN3 | ENSG00000055732.8 | 1.903E-12 | 0 | 72480 | gtex_brain_putamen_basal |
| rs603746 | 1 | 85441785 | MCOLN3 | ENSG00000055732.8 | 2.269E-7 | 0 | 72397 | gtex_brain_putamen_basal |
| rs631267 | 1 | 85441929 | MCOLN3 | ENSG00000055732.8 | 1.084E-6 | 0 | 72253 | gtex_brain_putamen_basal |
| rs632623 | 1 | 85442247 | MCOLN3 | ENSG00000055732.8 | 3.047E-10 | 0 | 71935 | gtex_brain_putamen_basal |
| rs650529 | 1 | 85442380 | MCOLN3 | ENSG00000055732.8 | 9.955E-7 | 0 | 71802 | gtex_brain_putamen_basal |
| rs651916 | 1 | 85442647 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 71535 | gtex_brain_putamen_basal |
| rs71292915 | 1 | 85442813 | MCOLN3 | ENSG00000055732.8 | 1.443E-9 | 0 | 71369 | gtex_brain_putamen_basal |
| rs34278299 | 1 | 85443141 | MCOLN3 | ENSG00000055732.8 | 2.499E-8 | 0 | 71041 | gtex_brain_putamen_basal |
| rs666515 | 1 | 85443605 | MCOLN3 | ENSG00000055732.8 | 2.268E-10 | 0 | 70577 | gtex_brain_putamen_basal |
| rs11485283 | 1 | 85444713 | MCOLN3 | ENSG00000055732.8 | 2.047E-6 | 0 | 69469 | gtex_brain_putamen_basal |
| rs10782534 | 1 | 85446122 | MCOLN3 | ENSG00000055732.8 | 1.093E-6 | 0 | 68060 | gtex_brain_putamen_basal |
| rs7537383 | 1 | 85446263 | MCOLN3 | ENSG00000055732.8 | 2.268E-10 | 0 | 67919 | gtex_brain_putamen_basal |
| rs11161497 | 1 | 85446687 | MCOLN3 | ENSG00000055732.8 | 7.464E-7 | 0 | 67495 | gtex_brain_putamen_basal |
| rs4907117 | 1 | 85447593 | MCOLN3 | ENSG00000055732.8 | 1.952E-13 | 0 | 66589 | gtex_brain_putamen_basal |
| rs397863428 | 1 | 85447634 | MCOLN3 | ENSG00000055732.8 | 3.476E-7 | 0 | 66548 | gtex_brain_putamen_basal |
| rs4907017 | 1 | 85447659 | MCOLN3 | ENSG00000055732.8 | 3.473E-7 | 0 | 66523 | gtex_brain_putamen_basal |
| rs4907018 | 1 | 85447663 | MCOLN3 | ENSG00000055732.8 | 3.528E-7 | 0 | 66519 | gtex_brain_putamen_basal |
| rs12751315 | 1 | 85448349 | MCOLN3 | ENSG00000055732.8 | 3.471E-7 | 0 | 65833 | gtex_brain_putamen_basal |
| rs12730688 | 1 | 85448351 | MCOLN3 | ENSG00000055732.8 | 3.471E-7 | 0 | 65831 | gtex_brain_putamen_basal |
| rs537638394 | 1 | 85448947 | MCOLN3 | ENSG00000055732.8 | 5.81E-8 | 0 | 65235 | gtex_brain_putamen_basal |
| rs6685363 | 1 | 85449080 | MCOLN3 | ENSG00000055732.8 | 3.468E-7 | 0 | 65102 | gtex_brain_putamen_basal |
| rs6576735 | 1 | 85449219 | MCOLN3 | ENSG00000055732.8 | 3.468E-7 | 0 | 64963 | gtex_brain_putamen_basal |
| rs6576736 | 1 | 85449251 | MCOLN3 | ENSG00000055732.8 | 3.468E-7 | 0 | 64931 | gtex_brain_putamen_basal |
| rs7549346 | 1 | 85449649 | MCOLN3 | ENSG00000055732.8 | 3.447E-7 | 0 | 64533 | gtex_brain_putamen_basal |
| rs7541684 | 1 | 85449697 | MCOLN3 | ENSG00000055732.8 | 3.467E-7 | 0 | 64485 | gtex_brain_putamen_basal |
| rs11161499 | 1 | 85450320 | MCOLN3 | ENSG00000055732.8 | 3.463E-7 | 0 | 63862 | gtex_brain_putamen_basal |
| rs6691674 | 1 | 85450627 | MCOLN3 | ENSG00000055732.8 | 3.462E-7 | 0 | 63555 | gtex_brain_putamen_basal |
| rs10873672 | 1 | 85450726 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 63456 | gtex_brain_putamen_basal |
| rs6691970 | 1 | 85450920 | MCOLN3 | ENSG00000055732.8 | 3.462E-7 | 0 | 63262 | gtex_brain_putamen_basal |
| rs6677091 | 1 | 85451087 | MCOLN3 | ENSG00000055732.8 | 2.112E-7 | 0 | 63095 | gtex_brain_putamen_basal |
| rs6700622 | 1 | 85451143 | MCOLN3 | ENSG00000055732.8 | 3.462E-7 | 0 | 63039 | gtex_brain_putamen_basal |
| rs67529032 | 1 | 85453471 | MCOLN3 | ENSG00000055732.8 | 1.65E-12 | 0 | 60711 | gtex_brain_putamen_basal |
| rs4907118 | 1 | 85455676 | MCOLN3 | ENSG00000055732.8 | 1.139E-6 | 0 | 58506 | gtex_brain_putamen_basal |
| rs11161500 | 1 | 85455825 | MCOLN3 | ENSG00000055732.8 | 1.442E-12 | 0 | 58357 | gtex_brain_putamen_basal |
| rs12130357 | 1 | 85457933 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 56249 | gtex_brain_putamen_basal |
| rs1439130 | 1 | 85458118 | MCOLN3 | ENSG00000055732.8 | 7.46E-7 | 0 | 56064 | gtex_brain_putamen_basal |
| rs11161501 | 1 | 85458148 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 56034 | gtex_brain_putamen_basal |
| rs56001083 | 1 | 85458562 | MCOLN3 | ENSG00000055732.8 | 1.502E-7 | 0 | 55620 | gtex_brain_putamen_basal |
| rs11161502 | 1 | 85458746 | MCOLN3 | ENSG00000055732.8 | 1.088E-6 | 0 | 55436 | gtex_brain_putamen_basal |
| rs7516329 | 1 | 85458862 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 55320 | gtex_brain_putamen_basal |
| rs7553886 | 1 | 85459188 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 54994 | gtex_brain_putamen_basal |
| rs7516610 | 1 | 85459198 | MCOLN3 | ENSG00000055732.8 | 1.734E-7 | 0 | 54984 | gtex_brain_putamen_basal |
| rs7516625 | 1 | 85459258 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 54924 | gtex_brain_putamen_basal |
| rs66461729 | 1 | 85459730 | MCOLN3 | ENSG00000055732.8 | 8.725E-7 | 0 | 54452 | gtex_brain_putamen_basal |
| rs72720523 | 1 | 85459731 | MCOLN3 | ENSG00000055732.8 | 8.628E-7 | 0 | 54451 | gtex_brain_putamen_basal |
| rs34739781 | 1 | 85460037 | MCOLN3 | ENSG00000055732.8 | 2.855E-7 | 0 | 54145 | gtex_brain_putamen_basal |
| rs11804248 | 1 | 85460912 | MCOLN3 | ENSG00000055732.8 | 7.785E-8 | 0 | 53270 | gtex_brain_putamen_basal |
| rs11799517 | 1 | 85460922 | MCOLN3 | ENSG00000055732.8 | 1.507E-7 | 0 | 53260 | gtex_brain_putamen_basal |
| rs35333053 | 1 | 85460945 | MCOLN3 | ENSG00000055732.8 | 1.107E-7 | 0 | 53237 | gtex_brain_putamen_basal |
| rs10873676 | 1 | 85461030 | MCOLN3 | ENSG00000055732.8 | 1.087E-6 | 0 | 53152 | gtex_brain_putamen_basal |
| rs2389792 | 1 | 85461256 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 52926 | gtex_brain_putamen_basal |
| rs11312420 | 1 | 85461269 | MCOLN3 | ENSG00000055732.8 | 1.612E-7 | 0 | 52913 | gtex_brain_putamen_basal |
| rs2389793 | 1 | 85461407 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 52775 | gtex_brain_putamen_basal |
| rs10873677 | 1 | 85461946 | MCOLN3 | ENSG00000055732.8 | 1.307E-6 | 0 | 52236 | gtex_brain_putamen_basal |
| rs11161503 | 1 | 85462582 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 51600 | gtex_brain_putamen_basal |
| rs11161504 | 1 | 85462652 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 51530 | gtex_brain_putamen_basal |
| rs11161505 | 1 | 85462665 | MCOLN3 | ENSG00000055732.8 | 1.617E-7 | 0 | 51517 | gtex_brain_putamen_basal |
| rs1837328 | 1 | 85462909 | MCOLN3 | ENSG00000055732.8 | 5.657E-7 | 0 | 51273 | gtex_brain_putamen_basal |
| rs12754569 | 1 | 85462971 | MCOLN3 | ENSG00000055732.8 | 1.693E-7 | 0 | 51211 | gtex_brain_putamen_basal |
| rs7552445 | 1 | 85463108 | MCOLN3 | ENSG00000055732.8 | 1.611E-7 | 0 | 51074 | gtex_brain_putamen_basal |
| rs7519134 | 1 | 85463208 | MCOLN3 | ENSG00000055732.8 | 2.867E-7 | 0 | 50974 | gtex_brain_putamen_basal |
| rs7522851 | 1 | 85463738 | MCOLN3 | ENSG00000055732.8 | 8.348E-8 | 0 | 50444 | gtex_brain_putamen_basal |
| rs3861690 | 1 | 85464509 | MCOLN3 | ENSG00000055732.8 | 8.365E-8 | 0 | 49673 | gtex_brain_putamen_basal |
| rs3850429 | 1 | 85464736 | MCOLN3 | ENSG00000055732.8 | 6.306E-13 | 0 | 49446 | gtex_brain_putamen_basal |
| rs726708 | 1 | 85464843 | MCOLN3 | ENSG00000055732.8 | 8.35E-8 | 0 | 49339 | gtex_brain_putamen_basal |
| rs4123223 | 1 | 85465026 | MCOLN3 | ENSG00000055732.8 | 3.98E-12 | 0 | 49156 | gtex_brain_putamen_basal |
| rs3895846 | 1 | 85465175 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 49007 | gtex_brain_putamen_basal |
| rs3850430 | 1 | 85465422 | MCOLN3 | ENSG00000055732.8 | 1.425E-6 | 0 | 48760 | gtex_brain_putamen_basal |
| rs72084679 | 1 | 85465723 | MCOLN3 | ENSG00000055732.8 | 7.264E-10 | 0 | 48459 | gtex_brain_putamen_basal |
| rs201833576 | 1 | 85465725 | MCOLN3 | ENSG00000055732.8 | 6.382E-9 | 0 | 48457 | gtex_brain_putamen_basal |
| rs10873678 | 1 | 85466995 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 47187 | gtex_brain_putamen_basal |
| rs12119445 | 1 | 85467130 | MCOLN3 | ENSG00000055732.8 | 6.306E-13 | 0 | 47052 | gtex_brain_putamen_basal |
| rs6576739 | 1 | 85468319 | MCOLN3 | ENSG00000055732.8 | 6.988E-15 | 0 | 45863 | gtex_brain_putamen_basal |
| rs55997821 | 1 | 85468807 | MCOLN3 | ENSG00000055732.8 | 6.486E-15 | 0 | 45375 | gtex_brain_putamen_basal |
| rs34099687 | 1 | 85470042 | MCOLN3 | ENSG00000055732.8 | 1.072E-6 | 0 | 44140 | gtex_brain_putamen_basal |
| rs4907121 | 1 | 85474400 | MCOLN3 | ENSG00000055732.8 | 7.524E-7 | 0 | 39782 | gtex_brain_putamen_basal |
| rs11161507 | 1 | 85474933 | MCOLN3 | ENSG00000055732.8 | 4.89E-7 | 0 | 39249 | gtex_brain_putamen_basal |
| rs12127296 | 1 | 85476229 | MCOLN3 | ENSG00000055732.8 | 2.403E-15 | 0 | 37953 | gtex_brain_putamen_basal |
| rs397863751 | 1 | 85476357 | MCOLN3 | ENSG00000055732.8 | 2.37E-15 | 0 | 37825 | gtex_brain_putamen_basal |
| rs11161508 | 1 | 85476636 | MCOLN3 | ENSG00000055732.8 | 7.174E-7 | 0 | 37546 | gtex_brain_putamen_basal |
| rs6701779 | 1 | 85479196 | MCOLN3 | ENSG00000055732.8 | 4.89E-7 | 0 | 34986 | gtex_brain_putamen_basal |
| rs35569266 | 1 | 85479769 | MCOLN3 | ENSG00000055732.8 | 1.679E-15 | 0 | 34413 | gtex_brain_putamen_basal |
| rs66631937 | 1 | 85480283 | MCOLN3 | ENSG00000055732.8 | 1.608E-15 | 0 | 33899 | gtex_brain_putamen_basal |
| rs12730329 | 1 | 85481700 | MCOLN3 | ENSG00000055732.8 | 1.43E-15 | 0 | 32482 | gtex_brain_putamen_basal |
| rs10782536 | 1 | 85484276 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 29906 | gtex_brain_putamen_basal |
| rs35656631 | 1 | 85487409 | MCOLN3 | ENSG00000055732.8 | 7.897E-16 | 0 | 26773 | gtex_brain_putamen_basal |
| rs12138711 | 1 | 85492596 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 21586 | gtex_brain_putamen_basal |
| rs34482655 | 1 | 85494037 | MCOLN3 | ENSG00000055732.8 | 1.192E-15 | 0 | 20145 | gtex_brain_putamen_basal |
| rs34443659 | 1 | 85494461 | MCOLN3 | ENSG00000055732.8 | 2.519E-15 | 0 | 19721 | gtex_brain_putamen_basal |
| rs72720544 | 1 | 85497262 | MCOLN3 | ENSG00000055732.8 | 1.769E-15 | 0 | 16920 | gtex_brain_putamen_basal |
| rs11161513 | 1 | 85501041 | MCOLN3 | ENSG00000055732.8 | 1.085E-6 | 0 | 13141 | gtex_brain_putamen_basal |
| rs4907123 | 1 | 85501937 | MCOLN3 | ENSG00000055732.8 | 1.124E-6 | 0 | 12245 | gtex_brain_putamen_basal |
| rs11161514 | 1 | 85505697 | MCOLN3 | ENSG00000055732.8 | 1.087E-6 | 0 | 8485 | gtex_brain_putamen_basal |
| rs4907125 | 1 | 85508601 | MCOLN3 | ENSG00000055732.8 | 9.794E-7 | 0 | 5581 | gtex_brain_putamen_basal |
| rs10873683 | 1 | 85509283 | MCOLN3 | ENSG00000055732.8 | 1.081E-6 | 0 | 4899 | gtex_brain_putamen_basal |
| rs34407588 | 1 | 85514282 | MCOLN3 | ENSG00000055732.8 | 2.003E-14 | 0 | -100 | gtex_brain_putamen_basal |
| rs3754270 | 1 | 85514841 | MCOLN3 | ENSG00000055732.8 | 4.037E-9 | 0 | -659 | gtex_brain_putamen_basal |
| rs6674050 | 1 | 85516174 | MCOLN3 | ENSG00000055732.8 | 3.045E-14 | 0 | -1992 | gtex_brain_putamen_basal |
| rs12755226 | 1 | 85519418 | MCOLN3 | ENSG00000055732.8 | 1.127E-13 | 0 | -5236 | gtex_brain_putamen_basal |
| rs56110958 | 1 | 85520226 | MCOLN3 | ENSG00000055732.8 | 1.769E-10 | 0 | -6044 | gtex_brain_putamen_basal |
| rs397780520 | 1 | 85521142 | MCOLN3 | ENSG00000055732.8 | 8.641E-7 | 0 | -6960 | gtex_brain_putamen_basal |
| rs35481466 | 1 | 85522749 | MCOLN3 | ENSG00000055732.8 | 2.352E-6 | 0 | -8567 | gtex_brain_putamen_basal |
| rs4907019 | 1 | 85522897 | MCOLN3 | ENSG00000055732.8 | 1.069E-12 | 0 | -8715 | gtex_brain_putamen_basal |
| rs12022421 | 1 | 85523398 | MCOLN3 | ENSG00000055732.8 | 1.051E-6 | 0 | -9216 | gtex_brain_putamen_basal |
| rs60142591 | 1 | 85524282 | MCOLN3 | ENSG00000055732.8 | 8.219E-14 | 0 | -10100 | gtex_brain_putamen_basal |
| rs56015101 | 1 | 85525748 | MCOLN3 | ENSG00000055732.8 | 8.631E-14 | 0 | -11566 | gtex_brain_putamen_basal |
| rs17371526 | 1 | 85526773 | MCOLN3 | ENSG00000055732.8 | 8.631E-14 | 0 | -12591 | gtex_brain_putamen_basal |
| rs12034421 | 1 | 85528006 | MCOLN3 | ENSG00000055732.8 | 1.338E-7 | 0 | -13824 | gtex_brain_putamen_basal |
| rs34422870 | 1 | 85528872 | MCOLN3 | ENSG00000055732.8 | 8.573E-14 | 0 | -14690 | gtex_brain_putamen_basal |
| rs12062414 | 1 | 85529097 | MCOLN3 | ENSG00000055732.8 | 2.352E-6 | 0 | -14915 | gtex_brain_putamen_basal |
| rs67628430 | 1 | 85529737 | MCOLN3 | ENSG00000055732.8 | 2.517E-13 | 0 | -15555 | gtex_brain_putamen_basal |
| rs4301650 | 1 | 85535377 | MCOLN3 | ENSG00000055732.8 | 1.858E-13 | 0 | -21195 | gtex_brain_putamen_basal |
| rs1809248 | 1 | 85535378 | MCOLN3 | ENSG00000055732.8 | 2.261E-9 | 0 | -21196 | gtex_brain_putamen_basal |
| rs61769367 | 1 | 85538186 | MCOLN3 | ENSG00000055732.8 | 2.425E-6 | 0 | -24004 | gtex_brain_putamen_basal |
| rs397765078 | 1 | 85538344 | MCOLN3 | ENSG00000055732.8 | 1.671E-7 | 0 | -24162 | gtex_brain_putamen_basal |
| rs4907022 | 1 | 85538603 | MCOLN3 | ENSG00000055732.8 | 1.385E-9 | 0 | -24421 | gtex_brain_putamen_basal |
| rs11161517 | 1 | 85538879 | MCOLN3 | ENSG00000055732.8 | 5.434E-11 | 0 | -24697 | gtex_brain_putamen_basal |
| rs2027365 | 1 | 85540765 | MCOLN3 | ENSG00000055732.8 | 6.514E-7 | 0 | -26583 | gtex_brain_putamen_basal |
| rs12079571 | 1 | 85541164 | MCOLN3 | ENSG00000055732.8 | 6.577E-7 | 0 | -26982 | gtex_brain_putamen_basal |
| rs2892866 | 1 | 85542557 | MCOLN3 | ENSG00000055732.8 | 6.577E-7 | 0 | -28375 | gtex_brain_putamen_basal |
| rs963489 | 1 | 85543072 | MCOLN3 | ENSG00000055732.8 | 6.577E-7 | 0 | -28890 | gtex_brain_putamen_basal |
| rs17120678 | 1 | 85544688 | MCOLN3 | ENSG00000055732.8 | 6.577E-7 | 0 | -30506 | gtex_brain_putamen_basal |
| rs35999405 | 1 | 85546605 | MCOLN3 | ENSG00000055732.8 | 9.512E-7 | 0 | -32423 | gtex_brain_putamen_basal |
| rs11161523 | 1 | 85550019 | MCOLN3 | ENSG00000055732.8 | 9.512E-7 | 0 | -35837 | gtex_brain_putamen_basal |
| rs11161524 | 1 | 85550618 | MCOLN3 | ENSG00000055732.8 | 9.512E-7 | 0 | -36436 | gtex_brain_putamen_basal |
| rs12130198 | 1 | 85551423 | MCOLN3 | ENSG00000055732.8 | 6.568E-7 | 0 | -37241 | gtex_brain_putamen_basal |
| rs12722826 | 1 | 85552682 | MCOLN3 | ENSG00000055732.8 | 2.11E-6 | 0 | -38500 | gtex_brain_putamen_basal |
| rs12722966 | 1 | 85552771 | MCOLN3 | ENSG00000055732.8 | 9.512E-7 | 0 | -38589 | gtex_brain_putamen_basal |
| rs397863410 | 1 | 85553807 | MCOLN3 | ENSG00000055732.8 | 1.032E-6 | 0 | -39625 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| SENGUPTA NASOPHARYNGEAL CARCINOMA WITH LMP1 DN | 175 | 82 | All SZGR 2.0 genes in this pathway |
| FULCHER INFLAMMATORY RESPONSE LECTIN VS LPS UP | 579 | 346 | All SZGR 2.0 genes in this pathway |
| HOOI ST7 TARGETS DN | 123 | 78 | All SZGR 2.0 genes in this pathway |
| DEURIG T CELL PROLYMPHOCYTIC LEUKEMIA UP | 368 | 234 | All SZGR 2.0 genes in this pathway |
| JAEGER METASTASIS DN | 258 | 141 | All SZGR 2.0 genes in this pathway |
| WAMUNYOKOLI OVARIAN CANCER LMP DN | 199 | 124 | All SZGR 2.0 genes in this pathway |
| RODRIGUES THYROID CARCINOMA ANAPLASTIC UP | 722 | 443 | All SZGR 2.0 genes in this pathway |
| GOZGIT ESR1 TARGETS DN | 781 | 465 | All SZGR 2.0 genes in this pathway |
| XU HGF TARGETS INDUCED BY AKT1 48HR DN | 27 | 17 | All SZGR 2.0 genes in this pathway |
| LIAO METASTASIS | 539 | 324 | All SZGR 2.0 genes in this pathway |
| KOYAMA SEMA3B TARGETS UP | 292 | 168 | All SZGR 2.0 genes in this pathway |
| BENPORATH SUZ12 TARGETS | 1038 | 678 | All SZGR 2.0 genes in this pathway |
| BENPORATH EED TARGETS | 1062 | 725 | All SZGR 2.0 genes in this pathway |
| BENPORATH ES WITH H3K27ME3 | 1118 | 744 | All SZGR 2.0 genes in this pathway |
| BENPORATH PRC2 TARGETS | 652 | 441 | All SZGR 2.0 genes in this pathway |
| ONDER CDH1 TARGETS 2 DN | 464 | 276 | All SZGR 2.0 genes in this pathway |
| SATO SILENCED BY METHYLATION IN PANCREATIC CANCER 1 | 419 | 273 | All SZGR 2.0 genes in this pathway |
| COATES MACROPHAGE M1 VS M2 DN | 78 | 44 | All SZGR 2.0 genes in this pathway |
| IWANAGA CARCINOGENESIS BY KRAS UP | 170 | 107 | All SZGR 2.0 genes in this pathway |
| ACEVEDO LIVER CANCER WITH H3K27ME3 UP | 295 | 149 | All SZGR 2.0 genes in this pathway |
| SMID BREAST CANCER BASAL UP | 648 | 398 | All SZGR 2.0 genes in this pathway |
| VANASSE BCL2 TARGETS DN | 74 | 50 | All SZGR 2.0 genes in this pathway |
| HAN SATB1 TARGETS DN | 442 | 275 | All SZGR 2.0 genes in this pathway |
| ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY | 1839 | 928 | All SZGR 2.0 genes in this pathway |