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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: RUFY1

Summary

GeneID

80230

Symbol

RUFY1

Synonyms

FLJ22251|RABIP4|ZFYVE12

Description

RUN and FYVE domain containing 1

Locus tag

Gene type

protein-coding

Map location

5q35.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.0276

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

GO:0008289

lipid binding

IEA

GO:0008270

zinc ion binding

IEA

GO:0008565

protein transporter activity

IEA

GO:0046872

metal ion binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0030100

regulation of endocytosis

IEA

GO:0015031

protein transport

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005737

cytoplasm

IEA

GO:0005768

endosome

IEA

GO:0016020

membrane

IEA

GO:0031901

early endosome membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
BMX	ETK \| PSCTK2 \| PSCTK3	BMX non-receptor tyrosine kinase	Affinity Capture-Western Biochemical Activity Two-hybrid	BioGRID	11877430
EPHA3	ETK \| ETK1 \| HEK \| HEK4 \| TYRO4	EPH receptor A3	-	HPRD	11877430
RAB4A	HRES-1/RAB4 \| RAB4	RAB4A, member RAS oncogene family	-	HPRD	11172003

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
KEGG_ENDOCYTOSIS	183	132	All SZGR genes in this pathway
KIM_GERMINAL_CENTER_T_HELPER_UP	66	42	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP	1691	1088	All SZGR genes in this pathway
LEE_AGING_NEOCORTEX_UP	89	59	All SZGR genes in this pathway
TSENG_IRS1_TARGETS_UP	113	71	All SZGR genes in this pathway
RAGHAVACHARI_PLATELET_SPECIFIC_GENES	70	46	All SZGR genes in this pathway
LU_EZH2_TARGETS_DN	414	237	All SZGR genes in this pathway
FIGUEROA_AML_METHYLATION_CLUSTER_1_DN	48	30	All SZGR genes in this pathway
WIERENGA_STAT5A_TARGETS_DN	213	127	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_LATE	1137	655	All SZGR genes in this pathway
DELACROIX_RARG_BOUND_MEF	367	231	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124/506	385	391	m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	385	391	m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-182	16	22	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-96	15	22	1A,m8	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.