DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
GKENS
Uniprot ID:
Q4KWH8
Source protein:
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1
Source gene:
PLCH1
Class:
DEG_APCC_KENBOX_2
Location:
994:998
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6486
ASA_SCORE:
87.04
COIL:
0.7092
CONS_SCORE:
0.3164
DSS_SCORE:
0.5803
HELIX:
0.2392
FCONS_SCORE:
1.0216
RIG_SCORE:
0.6893
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D991Y
TCGA-A5-A1OF
UCEC
TCGA
GKENS
DEG_APCC_KENBOX_2
0.25
p.D991Y
TCGA-EO-A3AY
UCEC
TCGA
GKENS
DEG_APCC_KENBOX_2
0.25
p.I992N
TCGA-BR-7707
STAD
TCGA
GKENS
DEG_APCC_KENBOX_2
0.2778
p.A1000P
TCGA-CG-5717
STAD
TCGA
GKENS
DEG_APCC_KENBOX_2
0.2778
p.E993K
TCGA-CN-5374
HNSC
TCGA
GKENS
DEG_APCC_KENBOX_2
0.3056
p.A1000T
TCGA-CV-6935
HNSC
TCGA
GKENS
DEG_APCC_KENBOX_2
0.2778
p.A1000T
TCGA-EE-A2A6
SKCM
TCGA
GKENS
DEG_APCC_KENBOX_2
0.2778
p.K1003T
TCGA-EY-A1G8
UCEC
TCGA
GKENS
DEG_APCC_KENBOX_2
0.3056
p.V1006L
DO15270
HNSC
ICGC
GKENS
DEG_APCC_KENBOX_2
0.1111
p.I1005V
DO22716
LGG
ICGC
GKENS
DEG_APCC_KENBOX_2
0.1389
p.L995P
DO22159
LGG
ICGC
GKENS
DEG_APCC_KENBOX_2
0.7582
p.V1000A
DO228949
LICA
ICGC
GKENS
DEG_APCC_KENBOX_2
0.2778
p.N984K
DO228976
LICA
ICGC
GKENS
DEG_APCC_KENBOX_2
0.0556
p.N984K
DO229026
LICA
ICGC
GKENS
DEG_APCC_KENBOX_2
0.0556
p.P986Q
DO229028
LICA
ICGC
GKENS
DEG_APCC_KENBOX_2
0.1111
p.F999L
DO229035
LICA
ICGC
GKENS
DEG_APCC_KENBOX_2
0.3056
p.F999L
SIDM00971
Breast Carcinoma
GDSC
GKENS
DEG_APCC_KENBOX_2
0.3056
p.F999L
SIDM00673
Breast Carcinoma
GDSC
GKENS
DEG_APCC_KENBOX_2
0.3056
p.T987N
DO229045
LICA
ICGC
GKENS
DEG_APCC_KENBOX_2
0.1389
p.G1002R
DO48486
LIHC
ICGC
GKENS
DEG_APCC_KENBOX_2
0.2222
p.G1002R
DO45357
LUAD
ICGC
GKENS
DEG_APCC_KENBOX_2
0.2222
p.G1002R
DO48665
SKCM
ICGC
GKENS
DEG_APCC_KENBOX_2
0.2222
p.N984I
DO23750
LUAD
ICGC
GKENS
DEG_APCC_KENBOX_2
0.0556
p.C1005W
DO230950
LUSC
ICGC
GKENS
DEG_APCC_KENBOX_2
0.1389
p.C1005W
DO224638
LUSC
ICGC
GKENS
DEG_APCC_KENBOX_2
0.1389
p.M994I
DO229122
NKTL
ICGC
GKENS
DEG_APCC_KENBOX_2
0.7618
p.C995Y
DO232761
PBCA
ICGC
GKENS
DEG_APCC_KENBOX_2
0.7087
p.G1002E
DO48665
SKCM
ICGC
GKENS
DEG_APCC_KENBOX_2
0.2222
p.A993V
DO38123
SKCM
ICGC
GKENS
DEG_APCC_KENBOX_2
0.3056
p.L987S
DO38887
STAD
ICGC
GKENS
DEG_APCC_KENBOX_2
0.1389
p.E987K
SIDM01175
Other Sarcomas
GDSC
GKENS
DEG_APCC_KENBOX_2
0.1389
p.E987K
ACH-002309
Sarcoma
CCLE
GKENS
DEG_APCC_KENBOX_2
0.1389
p.E987K
SW684
soft_tissue
COSMIC
GKENS
DEG_APCC_KENBOX_2
0.1389
p.I992T
SIDM00650
Small Cell Lung Carcinoma
GDSC
GKENS
DEG_APCC_KENBOX_2
0.2778
p.I992T
SIDM01681
Non-Cancerous
GDSC
GKENS
DEG_APCC_KENBOX_2
0.2778
p.R1006S
SIDM01025
Esophageal Squamous Cell Carcinoma
GDSC
GKENS
DEG_APCC_KENBOX_2
0.1111
p.R1006S
ACH-000637
Esophageal Cancer
CCLE
GKENS
DEG_APCC_KENBOX_2
0.1111
p.R1006S
KYSE-520
oesophagus
COSMIC
GKENS
DEG_APCC_KENBOX_2
0.1111
p.D1007N
MDST8
large_intestine
COSMIC
GKENS
DEG_APCC_KENBOX_2
0.0833
p.R998S
KYSE-520
oesophagus
COSMIC
GKENS
DEG_APCC_KENBOX_2
0.7427
Drug responses associated with PLCH1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GKENS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P27448
MAP/microtubule affinity-regulating kinase 3
DEG_APCC_KENBOX_2
525:529
GKENS
APC,CDC20,FZR1
0.6336
More...
Q4KWH8
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1
DEG_APCC_KENBOX_2
994:998
GKENS
APC,CDC20,FZR1
0.6486
More...
Q8TCG5
Carnitine O-palmitoyltransferase 1, brain isoform
DEG_APCC_KENBOX_2
776:780
GKENS
APC,CDC20,FZR1
0.5545
More...
Q9NZJ0
Denticleless protein homolog
DEG_APCC_KENBOX_2
651:655
GKENS
APC,CDC20,FZR1
0.9981
More...
Q96T92
Insulinoma-associated protein 2
DEG_APCC_KENBOX_2
353:357
GKENS
APC,CDC20,FZR1
0.8158
More...