DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LITPHVS
Uniprot ID:
A6NKT7
Source protein:
RanBP2-like and GRIP domain-containing protein 3
Source gene:
RGPD3
Class:
DEG_SCF_FBW7_1
Location:
1473:1479
E3 ligase:
FBXW7
DEGRON score:
0.8721
ASA_SCORE:
100.7857
COIL:
0.8867
CONS_SCORE:
0.3315
DSS_SCORE:
0.5874
HELIX:
0.0303
FCONS_SCORE:
1.1718
RIG_SCORE:
0.7028
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L1473S
TCGA-92-7341
LUSC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.7667
p.L1473S
DO26677
LUSC
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.7667
p.S1472F
TCGA-A5-A0G2
UCEC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472F
TCGA-EB-A3Y7
SKCM
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472F
DO37499
SKCM
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472F
DO41235
UCEC
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472Y
TCGA-A5-A0GP
UCEC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472Y
TCGA-BS-A0TC
UCEC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472Y
DO41109
UCEC
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472Y
DO42400
UCEC
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.75
p.E1463K
TCGA-FW-A3R5
SKCM
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.0556
p.E1463K
DO37406
SKCM
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.0556
p.E1463K
SW684
soft_tissue
COSMIC
LITPHVS
DEG_SCF_FBW7_1
0.0556
p.H1477N
SNU-81
large_intestine
COSMIC
LITPHVS
DEG_SCF_FBW7_1
0.6312
p.H1471N
SNU-81
large_intestine
COSMIC
LITPHVS
DEG_SCF_FBW7_1
0.2778
p.E1469K
SW684
soft_tissue
COSMIC
LITPHVS
DEG_SCF_FBW7_1
0.2222
Drug responses associated with RGPD3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LITPHVS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P49792
E3 SUMO-protein ligase RanBP2
DEG_SCF_FBW7_1
2448:2454
LITPHVS
FBXW7
0.9319
More...
Q99666
RANBP2-like and GRIP domain-containing protein 5/6
DEG_SCF_FBW7_1
1472:1478
LITPHVS
FBXW7
0.9475
More...
A6NKT7
RanBP2-like and GRIP domain-containing protein 3
DEG_SCF_FBW7_1
1473:1479
LITPHVS
FBXW7
0.8721
More...
O14715
RANBP2-like and GRIP domain-containing protein 8
DEG_SCF_FBW7_1
1472:1478
LITPHVS
FBXW7
0.9085
More...
P0DJD0
RANBP2-like and GRIP domain-containing protein 1
DEG_SCF_FBW7_1
1457:1463
LITPHVS
FBXW7
0.8406
More...
P0DJD1
RANBP2-like and GRIP domain-containing protein 2
DEG_SCF_FBW7_1
1465:1471
LITPHVS
FBXW7
0.8004
More...
Q7Z3J3
RanBP2-like and GRIP domain-containing protein 4
DEG_SCF_FBW7_1
1473:1479
LITPHVS
FBXW7
0.9808
More...