DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LITPHVS
Uniprot ID:
O14715
Source protein:
RANBP2-like and GRIP domain-containing protein 8
Source gene:
RGPD8
Class:
DEG_SCF_FBW7_1
Location:
1472:1478
E3 ligase:
FBXW7
DEGRON score:
0.9085
ASA_SCORE:
101.2714
COIL:
0.8663
CONS_SCORE:
0.3282
DSS_SCORE:
0.5838
HELIX:
0.0387
FCONS_SCORE:
1.1839
RIG_SCORE:
0.7059
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1486T
TCGA-B8-5550
KIRC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.5556
p.E1485D
TCGA-B8-5550
KIRC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.1389
p.R1484K
TCGA-CV-A6K1
HNSC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.1667
p.S1471Y
TCGA-EO-A22X
UCEC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.75
Drug responses associated with RGPD8 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LITPHVS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P49792
E3 SUMO-protein ligase RanBP2
DEG_SCF_FBW7_1
2448:2454
LITPHVS
FBXW7
0.9319
More...
Q99666
RANBP2-like and GRIP domain-containing protein 5/6
DEG_SCF_FBW7_1
1472:1478
LITPHVS
FBXW7
0.9475
More...
A6NKT7
RanBP2-like and GRIP domain-containing protein 3
DEG_SCF_FBW7_1
1473:1479
LITPHVS
FBXW7
0.8721
More...
O14715
RANBP2-like and GRIP domain-containing protein 8
DEG_SCF_FBW7_1
1472:1478
LITPHVS
FBXW7
0.9085
More...
P0DJD0
RANBP2-like and GRIP domain-containing protein 1
DEG_SCF_FBW7_1
1457:1463
LITPHVS
FBXW7
0.8406
More...
P0DJD1
RANBP2-like and GRIP domain-containing protein 2
DEG_SCF_FBW7_1
1465:1471
LITPHVS
FBXW7
0.8004
More...
Q7Z3J3
RanBP2-like and GRIP domain-containing protein 4
DEG_SCF_FBW7_1
1473:1479
LITPHVS
FBXW7
0.9808
More...