DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LITPHVS
Uniprot ID:
Q7Z3J3
Source protein:
RanBP2-like and GRIP domain-containing protein 4
Source gene:
RGPD4
Class:
DEG_SCF_FBW7_1
Location:
1473:1479
E3 ligase:
FBXW7
DEGRON score:
0.9808
ASA_SCORE:
102.6
COIL:
0.91
CONS_SCORE:
0.2155
DSS_SCORE:
0.5874
HELIX:
0.0301
FCONS_SCORE:
0.8247
RIG_SCORE:
0.7028
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1485T
TCGA-66-2785
LUSC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.1667
p.R1485T
DO26520
LUSC
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.1667
p.S1472Y
TCGA-AX-A06F
UCEC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472Y
TCGA-BK-A6W3
UCEC
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472Y
DO50076
UCEC
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.75
p.S1472Y
DO41752
UCEC
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.75
p.E1469K
TCGA-D3-A8GV
SKCM
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.2222
p.E1469K
DO219477
SKCM
ICGC
LITPHVS
DEG_SCF_FBW7_1
0.2222
p.S1482N
TCGA-LN-A8HZ
ESCA
TCGA
LITPHVS
DEG_SCF_FBW7_1
0.6944
Drug responses associated with RGPD4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LITPHVS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P49792
E3 SUMO-protein ligase RanBP2
DEG_SCF_FBW7_1
2448:2454
LITPHVS
FBXW7
0.9319
More...
Q99666
RANBP2-like and GRIP domain-containing protein 5/6
DEG_SCF_FBW7_1
1472:1478
LITPHVS
FBXW7
0.9475
More...
A6NKT7
RanBP2-like and GRIP domain-containing protein 3
DEG_SCF_FBW7_1
1473:1479
LITPHVS
FBXW7
0.8721
More...
O14715
RANBP2-like and GRIP domain-containing protein 8
DEG_SCF_FBW7_1
1472:1478
LITPHVS
FBXW7
0.9085
More...
P0DJD0
RANBP2-like and GRIP domain-containing protein 1
DEG_SCF_FBW7_1
1457:1463
LITPHVS
FBXW7
0.8406
More...
P0DJD1
RANBP2-like and GRIP domain-containing protein 2
DEG_SCF_FBW7_1
1465:1471
LITPHVS
FBXW7
0.8004
More...
Q7Z3J3
RanBP2-like and GRIP domain-containing protein 4
DEG_SCF_FBW7_1
1473:1479
LITPHVS
FBXW7
0.9808
More...