DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PFSST
Uniprot ID:
O75808
Source protein:
Calpain-15
Source gene:
CAPN15
Class:
DEG_SPOP_SBC_1
Location:
234:238
E3 ligase:
SPOP
DEGRON score:
0.9598
ASA_SCORE:
74.82
COIL:
0.787
CONS_SCORE:
0.3147
DSS_SCORE:
0.7161
HELIX:
0.1812
FCONS_SCORE:
1.032
RIG_SCORE:
0.5855
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P230Q
TCGA-EM-A22L
THCA
TCGA
PFSST
DEG_SPOP_SBC_1
0.2222
p.P230Q
DO38923
THCA
ICGC
PFSST
DEG_SPOP_SBC_1
0.2222
p.N241S
SIDM00227
Neuroblastoma
GDSC
PFSST
DEG_SPOP_SBC_1
0.25
p.N241S
ACH-001344
Neuroblastoma
CCLE
PFSST
DEG_SPOP_SBC_1
0.25
p.N241S
GI-ME-N
autonomic_ganglia
COSMIC
PFSST
DEG_SPOP_SBC_1
0.25
p.V244M
SIDM01039
Other Solid Cancers
GDSC
PFSST
DEG_SPOP_SBC_1
0.1667
p.V244M
ACH-001529
Endometrial/Uterine Cancer
CCLE
PFSST
DEG_SPOP_SBC_1
0.1667
p.V244M
JAR
placenta
COSMIC
PFSST
DEG_SPOP_SBC_1
0.1667
p.P226S
SIDM01029
Esophageal Squamous Cell Carcinoma
GDSC
PFSST
DEG_SPOP_SBC_1
0.1111
p.P226S
ACH-000873
Esophageal Cancer
CCLE
PFSST
DEG_SPOP_SBC_1
0.1111
p.F232I
SIDM00056
Thyroid Gland Carcinoma
GDSC
PFSST
DEG_SPOP_SBC_1
0.2778
p.F232I
ACH-002148
Thyroid Cancer
CCLE
PFSST
DEG_SPOP_SBC_1
0.2778
p.F232I
K5
thyroid
COSMIC
PFSST
DEG_SPOP_SBC_1
0.2778
p.P243L
SIDM01574
Plasma Cell Myeloma
GDSC
PFSST
DEG_SPOP_SBC_1
0.1944
p.P243L
ACH-000588
Myeloma
CCLE
PFSST
DEG_SPOP_SBC_1
0.1944
Drug responses associated with CAPN15 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PFSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A2RUB1
Meiosis-specific coiled-coil domain-containing protein MEIOC
DEG_SPOP_SBC_1
81:85
PFSST
SPOP
0.9486
More...
O95359
Transforming acidic coiled-coil-containing protein 2
DEG_SPOP_SBC_1
2349:2353
PFSST
SPOP
0.9988
More...
P53804
E3 ubiquitin-protein ligase TTC3
DEG_SPOP_SBC_1
1013:1017
PFSST
SPOP
0.9797
More...
Q9UNF0
Protein kinase C and casein kinase substrate in neurons protein 2
DEG_SPOP_SBC_1
406:410
PFSST
SPOP
0.9979
More...
O75808
Calpain-15
DEG_SPOP_SBC_1
234:238
PFSST
SPOP
0.9598
More...
Q53SZ7
Proline-rich protein 30
DEG_SPOP_SBC_1
50:54
PFSST
SPOP
0.8135
More...