DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PFSST
Uniprot ID:
Q9UNF0
Source protein:
Protein kinase C and casein kinase substrate in neurons protein 2
Source gene:
PACSIN2
Class:
DEG_SPOP_SBC_1
Location:
406:410
E3 ligase:
SPOP
DEGRON score:
0.9979
ASA_SCORE:
52.08
COIL:
0.7766
CONS_SCORE:
0.4753
DSS_SCORE:
0.6816
HELIX:
0.1056
FCONS_SCORE:
1.0272
RIG_SCORE:
0.6274
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D397N
TCGA-BR-4370
STAD
TCGA
PFSST
DEG_SPOP_SBC_1
0.0833
p.E402Q
TCGA-CV-6961
HNSC
TCGA
PFSST
DEG_SPOP_SBC_1
0.2222
p.F419L
TCGA-KQ-A41N
BLCA
TCGA
PFSST
DEG_SPOP_SBC_1
0.0833
p.G409A
DO4963
BRCA
ICGC
PFSST
DEG_SPOP_SBC_1
0.754
p.E418K
DO5936
BRCA
ICGC
PFSST
DEG_SPOP_SBC_1
0.1111
p.D420V
DO233784
GACA
ICGC
PFSST
DEG_SPOP_SBC_1
0.0556
p.T396N
DO228948
LICA
ICGC
PFSST
DEG_SPOP_SBC_1
0.5
p.N405K
DO228985
LICA
ICGC
PFSST
DEG_SPOP_SBC_1
0.3056
p.P418S
DO222843
MELA
ICGC
PFSST
DEG_SPOP_SBC_1
0.1111
Drug responses associated with PACSIN2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PFSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A2RUB1
Meiosis-specific coiled-coil domain-containing protein MEIOC
DEG_SPOP_SBC_1
81:85
PFSST
SPOP
0.9486
More...
O95359
Transforming acidic coiled-coil-containing protein 2
DEG_SPOP_SBC_1
2349:2353
PFSST
SPOP
0.9988
More...
P53804
E3 ubiquitin-protein ligase TTC3
DEG_SPOP_SBC_1
1013:1017
PFSST
SPOP
0.9797
More...
Q9UNF0
Protein kinase C and casein kinase substrate in neurons protein 2
DEG_SPOP_SBC_1
406:410
PFSST
SPOP
0.9979
More...
O75808
Calpain-15
DEG_SPOP_SBC_1
234:238
PFSST
SPOP
0.9598
More...
Q53SZ7
Proline-rich protein 30
DEG_SPOP_SBC_1
50:54
PFSST
SPOP
0.8135
More...