DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PWSST
Uniprot ID:
Q9UPQ9
Source protein:
Trinucleotide repeat-containing gene 6B protein
Source gene:
TNRC6B
Class:
DEG_SPOP_SBC_1
Location:
1613:1617
E3 ligase:
SPOP
DEGRON score:
0.9884
ASA_SCORE:
78.28
COIL:
0.9052
CONS_SCORE:
0.4665
DSS_SCORE:
0.6331
HELIX:
0.0626
FCONS_SCORE:
1.0069
RIG_SCORE:
0.6037
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1620Q
TCGA-AP-A1DV
UCEC
TCGA
PWSST
DEG_SPOP_SBC_1
0.25
p.R1623S
TCGA-EE-A2ML
SKCM
TCGA
PWSST
DEG_SPOP_SBC_1
0.1667
p.R1623S
DO37408
SKCM
ICGC
PWSST
DEG_SPOP_SBC_1
0.1667
p.P1603S
TCGA-ER-A42L
SKCM
TCGA
PWSST
DEG_SPOP_SBC_1
0.0556
p.P1603S
DO223910
SKCM
ICGC
PWSST
DEG_SPOP_SBC_1
0.0556
p.P1610Q
TCGA-XK-AAIW
PRAD
TCGA
PWSST
DEG_SPOP_SBC_1
0.25
p.P1610Q
DO51407
PRAD
ICGC
PWSST
DEG_SPOP_SBC_1
0.25
p.R1623G
DO229459
SKCA
ICGC
PWSST
DEG_SPOP_SBC_1
0.1667
p.S1611A
SIDM00845
Burkitt's Lymphoma
GDSC
PWSST
DEG_SPOP_SBC_1
0.2778
p.P1610L
SIDM00006
Other Solid Cancers
GDSC
PWSST
DEG_SPOP_SBC_1
0.25
p.P1610L
MCC26
skin
COSMIC
PWSST
DEG_SPOP_SBC_1
0.25
p.N1607S
SIDM01608
Endometrial Carcinoma
GDSC
PWSST
DEG_SPOP_SBC_1
0.1667
p.A1627V
VAL
haematopoietic_and_lymphoid_tissue
COSMIC
PWSST
DEG_SPOP_SBC_1
0.0556
p.R1615H
SNU-175
large_intestine
COSMIC
PWSST
DEG_SPOP_SBC_1
0.8244
Drug responses associated with TNRC6B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PWSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P49335
POU domain, class 3, transcription factor 4
DEG_SPOP_SBC_1
66:70
PWSST
SPOP
0.5761
More...
Q13505
Metaxin-1
DEG_SPOP_SBC_1
19:23
PWSST
SPOP
0.8991
More...
Q9UPQ9
Trinucleotide repeat-containing gene 6B protein
DEG_SPOP_SBC_1
1613:1617
PWSST
SPOP
0.9884
More...
Q9Y2K5
R3H domain-containing protein 2
DEG_SPOP_SBC_1
327:331
PWSST
SPOP
0.9984
More...
Q15032
R3H domain-containing protein 1
DEG_SPOP_SBC_1
359:363
PWSST
SPOP
0.9986
More...