DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
RKENE
Uniprot ID:
Q8IUC8
Source protein:
Polypeptide N-acetylgalactosaminyltransferase 13
Source gene:
GALNT13
Class:
DEG_APCC_KENBOX_2
Location:
447:451
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5702
ASA_SCORE:
107.28
COIL:
0.9212
CONS_SCORE:
0.4561
DSS_SCORE:
0.2556
HELIX:
0.012
FCONS_SCORE:
0.7381
RIG_SCORE:
0.7803
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R447S
TCGA-05-4417
LUAD
TCGA
RKENE
DEG_APCC_KENBOX_2
0.6316
p.R447S
DO23570
LUAD
ICGC
RKENE
DEG_APCC_KENBOX_2
0.6316
p.Q440L
TCGA-17-Z022
LUAD
TCGA
RKENE
DEG_APCC_KENBOX_2
0.1389
p.E451K
TCGA-3N-A9WC
SKCM
TCGA
RKENE
DEG_APCC_KENBOX_2
0.591
p.E451K
TCGA-RP-A694
SKCM
TCGA
RKENE
DEG_APCC_KENBOX_2
0.591
p.E451K
DO51269
SKCM
ICGC
RKENE
DEG_APCC_KENBOX_2
0.591
p.E451K
DO51234
SKCM
ICGC
RKENE
DEG_APCC_KENBOX_2
0.591
p.E451K
SIDM00545
Melanoma
GDSC
RKENE
DEG_APCC_KENBOX_2
0.591
p.E451K
ACH-000987
Skin Cancer
CCLE
RKENE
DEG_APCC_KENBOX_2
0.591
p.E451K
Mewo
skin
COSMIC
RKENE
DEG_APCC_KENBOX_2
0.591
p.R447L
TCGA-55-8205
LUAD
TCGA
RKENE
DEG_APCC_KENBOX_2
0.7316
p.R447L
DO48884
LUAD
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7316
p.Q440H
TCGA-A6-6138
COAD
TCGA
RKENE
DEG_APCC_KENBOX_2
0.1389
p.Q440H
DO10427
COAD
ICGC
RKENE
DEG_APCC_KENBOX_2
0.1389
p.K452N
TCGA-C8-A12K
BRCA
TCGA
RKENE
DEG_APCC_KENBOX_2
0.3056
p.K452N
DO1258
BRCA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.3056
p.D443Y
TCGA-EE-A184
SKCM
TCGA
RKENE
DEG_APCC_KENBOX_2
0.2222
p.D443Y
DO47442
SKCM
ICGC
RKENE
DEG_APCC_KENBOX_2
0.2222
p.D443Y
SIDM01986
Non-Small Cell Lung Carcinoma
GDSC
RKENE
DEG_APCC_KENBOX_2
0.2222
p.R447H
TCGA-EI-6917
READ
TCGA
RKENE
DEG_APCC_KENBOX_2
0.7133
p.R447H
DO222884
COCA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7133
p.R447H
DO36881
READ
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7133
p.R447H
SIDM00216
Colorectal Carcinoma
GDSC
RKENE
DEG_APCC_KENBOX_2
0.7133
p.R447H
ACH-000989
Colon/Colorectal Cancer
CCLE
RKENE
DEG_APCC_KENBOX_2
0.7133
p.T438S
DO227549
COCA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.0833
p.E437K
DO222688
ESCA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.0556
p.E437K
SIDM01175
Other Sarcomas
GDSC
RKENE
DEG_APCC_KENBOX_2
0.0556
p.E437K
ACH-002309
Sarcoma
CCLE
RKENE
DEG_APCC_KENBOX_2
0.0556
p.E437K
SW684
soft_tissue
COSMIC
RKENE
DEG_APCC_KENBOX_2
0.0556
p.M445I
DO229036
LICA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.2778
p.E449K
DO220878
MELA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7022
p.E449K
DO220899
MELA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7022
p.E449K
DO220913
MELA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7022
p.E449K
DO222402
MELA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7022
p.E449K
DO229456
SKCA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7022
p.E449K
SIDM01059
Melanoma
GDSC
RKENE
DEG_APCC_KENBOX_2
0.7022
p.E449K
ACH-000915
Skin Cancer
CCLE
RKENE
DEG_APCC_KENBOX_2
0.7022
p.E449K
IPC-298
skin
COSMIC
RKENE
DEG_APCC_KENBOX_2
0.7022
p.M445V
SIDM00535
Chondrosarcoma
GDSC
RKENE
DEG_APCC_KENBOX_2
0.2778
p.M445V
ACH-001519
Bone Cancer
CCLE
RKENE
DEG_APCC_KENBOX_2
0.2778
p.M445V
H-EMC-SS
bone
COSMIC
RKENE
DEG_APCC_KENBOX_2
0.2778
Drug responses associated with GALNT13 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14966
Zinc finger protein 638
DEG_APCC_KENBOX_2
478:482
RKENE
APC,CDC20,FZR1
0.7217
More...
Q15170
Transcription elongation factor A protein-like 1
DEG_APCC_KENBOX_2
5:9
RKENE
APC,CDC20,FZR1
0.9469
More...
Q5TCQ9
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3
DEG_APCC_KENBOX_2
856:860
RKENE
APC,CDC20,FZR1
0.9466
More...
Q8IUC8
Polypeptide N-acetylgalactosaminyltransferase 13
DEG_APCC_KENBOX_2
447:451
RKENE
APC,CDC20,FZR1
0.5702
More...
Q8N3J5
Protein phosphatase 1K, mitochondrial
DEG_APCC_KENBOX_2
104:108
RKENE
APC,CDC20,FZR1
0.9571
More...