DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
RKENE
Uniprot ID:
Q8N3J5
Source protein:
Protein phosphatase 1K, mitochondrial
Source gene:
PPM1K
Class:
DEG_APCC_KENBOX_2
Location:
104:108
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9571
ASA_SCORE:
80.38
COIL:
0.7654
CONS_SCORE:
0.5604
DSS_SCORE:
0.3317
HELIX:
0.1636
FCONS_SCORE:
1.1721
RIG_SCORE:
0.7824
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A98T
TCGA-5M-AAT4
COAD
TCGA
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A98T
TCGA-AZ-6598
COAD
TCGA
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A98T
TCGA-R6-A6DN
ESCA
TCGA
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A98T
DO10276
COAD
ICGC
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A98T
DO223702
COAD
ICGC
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A98T
SIDM00305
Ovarian Carcinoma
GDSC
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A98T
SIDM00220
Ovarian Carcinoma
GDSC
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A98T
ACH-001145
Ovarian Cancer
CCLE
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A98T
ACH-001513
Cervical Cancer
CCLE
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A98T
JHOS-2
ovary
COSMIC
RKENE
DEG_APCC_KENBOX_2
0.1667
p.R110L
TCGA-AP-A1E0
UCEC
TCGA
RKENE
DEG_APCC_KENBOX_2
0.2778
p.R110L
DO43154
UCEC
ICGC
RKENE
DEG_APCC_KENBOX_2
0.2778
p.R110W
TCGA-DU-6392
LGG
TCGA
RKENE
DEG_APCC_KENBOX_2
0.2778
p.R110W
DO22237
LGG
ICGC
RKENE
DEG_APCC_KENBOX_2
0.2778
p.A114V
TCGA-FI-A2D5
UCEC
TCGA
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A114V
DO41331
UCEC
ICGC
RKENE
DEG_APCC_KENBOX_2
0.1667
p.E106K
TCGA-FR-A69P
SKCM
TCGA
RKENE
DEG_APCC_KENBOX_2
0.7022
p.E106K
DO47292
SKCM
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7022
p.G102A
TCGA-P3-A6SX
HNSC
TCGA
RKENE
DEG_APCC_KENBOX_2
0.2778
p.G102A
DO49051
HNSC
ICGC
RKENE
DEG_APCC_KENBOX_2
0.2778
p.A114T
DO9876
COAD
ICGC
RKENE
DEG_APCC_KENBOX_2
0.1667
p.A114T
DO23258
LINC
ICGC
RKENE
DEG_APCC_KENBOX_2
0.1667
p.F113L
DO229022
LICA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.1944
p.D112E
DO229026
LICA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.2222
p.D112E
DO229045
LICA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.2222
p.A104D
DO229031
LICA
ICGC
RKENE
DEG_APCC_KENBOX_2
0.7793
p.A106V
DO43186
UCEC
ICGC
RKENE
DEG_APCC_KENBOX_2
0.6936
p.A106V
DO52402
UCEC
ICGC
RKENE
DEG_APCC_KENBOX_2
0.6936
p.A106V
MOLT-4
haematopoietic_and_lymphoid_tissue
COSMIC
RKENE
DEG_APCC_KENBOX_2
0.6936
p.R104W
SIDM02035
Colorectal Carcinoma
GDSC
RKENE
DEG_APCC_KENBOX_2
0.7523
p.R104W
SIDM01263
T-Lymphoblastic Leukemia
GDSC
RKENE
DEG_APCC_KENBOX_2
0.7523
p.G102S
ACH-001645
Skin Cancer
CCLE
RKENE
DEG_APCC_KENBOX_2
0.2778
p.A104T
CAL-51
breast
COSMIC
RKENE
DEG_APCC_KENBOX_2
0.7139
Drug responses associated with PPM1K mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RKENE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14966
Zinc finger protein 638
DEG_APCC_KENBOX_2
478:482
RKENE
APC,CDC20,FZR1
0.7217
More...
Q15170
Transcription elongation factor A protein-like 1
DEG_APCC_KENBOX_2
5:9
RKENE
APC,CDC20,FZR1
0.9469
More...
Q5TCQ9
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3
DEG_APCC_KENBOX_2
856:860
RKENE
APC,CDC20,FZR1
0.9466
More...
Q8IUC8
Polypeptide N-acetylgalactosaminyltransferase 13
DEG_APCC_KENBOX_2
447:451
RKENE
APC,CDC20,FZR1
0.5702
More...
Q8N3J5
Protein phosphatase 1K, mitochondrial
DEG_APCC_KENBOX_2
104:108
RKENE
APC,CDC20,FZR1
0.9571
More...