DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
SKENS
Uniprot ID:
O75592
Source protein:
E3 ubiquitin-protein ligase MYCBP2
Source gene:
MYCBP2
Class:
DEG_APCC_KENBOX_2
Location:
3619:3623
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9101
ASA_SCORE:
100.36
COIL:
0.5254
CONS_SCORE:
0.6541
DSS_SCORE:
0.7639
HELIX:
0.467
FCONS_SCORE:
1.2409
RIG_SCORE:
0.6254
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S3623L
TCGA-66-2778
LUSC
TCGA
SKENS
DEG_APCC_KENBOX_2
0.6556
p.H3616Y
TCGA-A8-A095
BRCA
TCGA
SKENS
DEG_APCC_KENBOX_2
0.25
p.R3617C
TCGA-AG-A002
READ
TCGA
SKENS
DEG_APCC_KENBOX_2
0.2778
p.N3616K
DO21235
LAML
ICGC
SKENS
DEG_APCC_KENBOX_2
0.25
p.N3616K
DO28281
OV
ICGC
SKENS
DEG_APCC_KENBOX_2
0.25
p.E3612D
DO22237
LGG
ICGC
SKENS
DEG_APCC_KENBOX_2
0.1389
p.T3618K
DO229031
LICA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.3056
p.E3621K
DO219565
LIHC
ICGC
SKENS
DEG_APCC_KENBOX_2
0.7022
p.N3622H
DO40884
UCEC
ICGC
SKENS
DEG_APCC_KENBOX_2
0.7423
p.V3631L
DO40884
UCEC
ICGC
SKENS
DEG_APCC_KENBOX_2
0.1111
Drug responses associated with MYCBP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75592
E3 ubiquitin-protein ligase MYCBP2
DEG_APCC_KENBOX_2
3619:3623
SKENS
APC,CDC20,FZR1
0.9101
More...
O94966
Ubiquitin carboxyl-terminal hydrolase 19
DEG_APCC_KENBOX_2
704:708
SKENS
APC,CDC20,FZR1
0.6409
More...
Q5FWF5
N-acetyltransferase ESCO1
DEG_APCC_KENBOX_2
8:12
SKENS
APC,CDC20,FZR1
0.9682
More...
Q5TB80
Centrosomal protein of 162 kDa
DEG_APCC_KENBOX_2
215:219
SKENS
APC,CDC20,FZR1
0.996
More...
Q5BJE1
Coiled-coil domain-containing protein 178
DEG_APCC_KENBOX_2
53:57
SKENS
APC,CDC20,FZR1
0.8419
More...