DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
SKENS
Uniprot ID:
Q5BJE1
Source protein:
Coiled-coil domain-containing protein 178
Source gene:
CCDC178
Class:
DEG_APCC_KENBOX_2
Location:
53:57
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8419
ASA_SCORE:
95.86
COIL:
0.7286
CONS_SCORE:
0.2957
DSS_SCORE:
0.4069
HELIX:
0.2414
FCONS_SCORE:
0.9863
RIG_SCORE:
0.643
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K54M
TCGA-17-Z055
LUAD
TCGA
SKENS
DEG_APCC_KENBOX_2
0.8062
p.T66A
TCGA-A5-A2K3
UCEC
TCGA
SKENS
DEG_APCC_KENBOX_2
0.0833
p.T66A
TCGA-AP-A1DV
UCEC
TCGA
SKENS
DEG_APCC_KENBOX_2
0.0833
p.T66A
DO43186
UCEC
ICGC
SKENS
DEG_APCC_KENBOX_2
0.0833
p.T66A
DO43899
UCEC
ICGC
SKENS
DEG_APCC_KENBOX_2
0.0833
p.K54N
TCGA-DA-A1I0
SKCM
TCGA
SKENS
DEG_APCC_KENBOX_2
0.6918
p.K54N
DO37719
SKCM
ICGC
SKENS
DEG_APCC_KENBOX_2
0.6918
p.H61Y
TCGA-SY-A9G5
BLCA
TCGA
SKENS
DEG_APCC_KENBOX_2
0.2222
p.H61Y
DO51906
BLCA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.2222
p.M43L
TCGA-XF-A9SU
BLCA
TCGA
SKENS
DEG_APCC_KENBOX_2
0.0556
p.M43L
DO223600
BLCA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.0556
p.Q45E
DO228562
LICA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.1111
p.Q45E
DO228807
LICA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.1111
p.K54T
DO220866
MELA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.7306
p.G51R
DO222908
MELA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.2778
p.G59S
DO232761
PBCA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.2778
p.S46R
SIDM01473
Plasma Cell Myeloma
GDSC
SKENS
DEG_APCC_KENBOX_2
0.1389
p.S46R
ACH-000541
Myeloma
CCLE
SKENS
DEG_APCC_KENBOX_2
0.1389
p.M65I
ACH-002396
Bone Cancer
CCLE
SKENS
DEG_APCC_KENBOX_2
0.1111
p.M65I
Sarc9371
bone
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.1111
p.E47K
KYSE-180
oesophagus
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.1667
Drug responses associated with CCDC178 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75592
E3 ubiquitin-protein ligase MYCBP2
DEG_APCC_KENBOX_2
3619:3623
SKENS
APC,CDC20,FZR1
0.9101
More...
O94966
Ubiquitin carboxyl-terminal hydrolase 19
DEG_APCC_KENBOX_2
704:708
SKENS
APC,CDC20,FZR1
0.6409
More...
Q5FWF5
N-acetyltransferase ESCO1
DEG_APCC_KENBOX_2
8:12
SKENS
APC,CDC20,FZR1
0.9682
More...
Q5TB80
Centrosomal protein of 162 kDa
DEG_APCC_KENBOX_2
215:219
SKENS
APC,CDC20,FZR1
0.996
More...
Q5BJE1
Coiled-coil domain-containing protein 178
DEG_APCC_KENBOX_2
53:57
SKENS
APC,CDC20,FZR1
0.8419
More...