DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
SKENS
Uniprot ID:
O94966
Source protein:
Ubiquitin carboxyl-terminal hydrolase 19
Source gene:
USP19
Class:
DEG_APCC_KENBOX_2
Location:
704:708
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6409
ASA_SCORE:
76.88
COIL:
0.8502
CONS_SCORE:
0.3528
DSS_SCORE:
0.1952
HELIX:
0.0418
FCONS_SCORE:
0.8414
RIG_SCORE:
0.7009
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R707H
TCGA-5M-AAT6
COAD
TCGA
SKENS
DEG_APCC_KENBOX_2
0.8244
p.R707H
TCGA-AA-A01R
COAD
TCGA
SKENS
DEG_APCC_KENBOX_2
0.8244
p.R707H
TCGA-AP-A1DV
UCEC
TCGA
SKENS
DEG_APCC_KENBOX_2
0.8244
p.R707H
SIDM00217
Colorectal Carcinoma
GDSC
SKENS
DEG_APCC_KENBOX_2
0.8244
p.R707H
ACH-000999
Colon/Colorectal Cancer
CCLE
SKENS
DEG_APCC_KENBOX_2
0.8244
p.R707H
SNU-1040
large_intestine
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.8244
p.L697M
TCGA-CV-7415
HNSC
TCGA
SKENS
DEG_APCC_KENBOX_2
0.1389
p.G700W
TCGA-EE-A2MD
SKCM
TCGA
SKENS
DEG_APCC_KENBOX_2
0.2222
p.D704A
TCGA-EE-A3AB
SKCM
TCGA
SKENS
DEG_APCC_KENBOX_2
0.7793
p.G700E
TCGA-EO-A22U
UCEC
TCGA
SKENS
DEG_APCC_KENBOX_2
0.2222
p.K711T
TCGA-VQ-A8E3
STAD
TCGA
SKENS
DEG_APCC_KENBOX_2
0.25
p.L710I
DO8264
COAD
ICGC
SKENS
DEG_APCC_KENBOX_2
0.2778
p.L710I
DO41133
UCEC
ICGC
SKENS
DEG_APCC_KENBOX_2
0.2778
p.P708A
DO22938
LIHC
ICGC
SKENS
DEG_APCC_KENBOX_2
0.7503
p.L716F
DO32904
PACA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.1111
p.L710F
DO218849
SKCA
ICGC
SKENS
DEG_APCC_KENBOX_2
0.2778
p.P708L
DO219764
UCEC
ICGC
SKENS
DEG_APCC_KENBOX_2
0.7582
p.T716I
SIDM01175
Other Sarcomas
GDSC
SKENS
DEG_APCC_KENBOX_2
0.1111
p.T716I
ACH-002309
Sarcoma
CCLE
SKENS
DEG_APCC_KENBOX_2
0.1111
p.T716I
SW684
soft_tissue
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.1111
p.N710K
SIDM00795
Melanoma
GDSC
SKENS
DEG_APCC_KENBOX_2
0.2778
p.N710K
ACH-000219
Skin Cancer
CCLE
SKENS
DEG_APCC_KENBOX_2
0.2778
p.N710K
ACH-002001
Skin Cancer
CCLE
SKENS
DEG_APCC_KENBOX_2
0.2778
p.N710K
ACH-002002
Skin Cancer
CCLE
SKENS
DEG_APCC_KENBOX_2
0.2778
p.N710K
ACH-002003
Skin Cancer
CCLE
SKENS
DEG_APCC_KENBOX_2
0.2778
p.N710K
A375
skin
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.2778
p.T706I
SW684
soft_tissue
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.7078
p.A710V
KP-2
pancreas
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.2778
p.N700K
A375
skin
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.2222
p.R697H
SNU-1040
large_intestine
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.1389
p.D707Y
42-MG-BA
central_nervous_system
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.7325
p.T718I
SW684
soft_tissue
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.0556
p.R709H
SNU-1040
large_intestine
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.3056
p.N712K
A375
skin
COSMIC
SKENS
DEG_APCC_KENBOX_2
0.2222
Drug responses associated with USP19 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75592
E3 ubiquitin-protein ligase MYCBP2
DEG_APCC_KENBOX_2
3619:3623
SKENS
APC,CDC20,FZR1
0.9101
More...
O94966
Ubiquitin carboxyl-terminal hydrolase 19
DEG_APCC_KENBOX_2
704:708
SKENS
APC,CDC20,FZR1
0.6409
More...
Q5FWF5
N-acetyltransferase ESCO1
DEG_APCC_KENBOX_2
8:12
SKENS
APC,CDC20,FZR1
0.9682
More...
Q5TB80
Centrosomal protein of 162 kDa
DEG_APCC_KENBOX_2
215:219
SKENS
APC,CDC20,FZR1
0.996
More...
Q5BJE1
Coiled-coil domain-containing protein 178
DEG_APCC_KENBOX_2
53:57
SKENS
APC,CDC20,FZR1
0.8419
More...