DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VETTS
Uniprot ID:
P98160
Source protein:
Basement membrane-specific heparan sulfate proteoglycan core protein
Source gene:
HSPG2
Class:
DEG_SPOP_SBC_1
Location:
249:253
E3 ligase:
SPOP
DEGRON score:
0.9944
ASA_SCORE:
61.14
COIL:
0.6848
CONS_SCORE:
0.2214
DSS_SCORE:
0.5622
HELIX:
0.03
FCONS_SCORE:
0.8788
RIG_SCORE:
0.7432
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E259D
TCGA-12-1088
GBM
TCGA
VETTS
DEG_SPOP_SBC_1
0.1667
p.E259D
DO13701
GBM
ICGC
VETTS
DEG_SPOP_SBC_1
0.1667
p.M263T
TCGA-95-7567
LUAD
TCGA
VETTS
DEG_SPOP_SBC_1
0.0556
p.M263T
DO25564
LUAD
ICGC
VETTS
DEG_SPOP_SBC_1
0.0556
p.S242I
TCGA-FS-A1Z0
SKCM
TCGA
VETTS
DEG_SPOP_SBC_1
0.1389
p.S242I
DO37431
SKCM
ICGC
VETTS
DEG_SPOP_SBC_1
0.1389
p.M263I
DO230309
COCA
ICGC
VETTS
DEG_SPOP_SBC_1
0.0556
p.M263I
SIDM00309
Mesothelioma
GDSC
VETTS
DEG_SPOP_SBC_1
0.0556
p.T252K
DO232849
NACA
ICGC
VETTS
DEG_SPOP_SBC_1
0.7306
p.I241M
ACH-000694
Esophageal Cancer
CCLE
VETTS
DEG_SPOP_SBC_1
0.1111
p.F245L
ACH-000901
Lung Cancer
CCLE
VETTS
DEG_SPOP_SBC_1
0.2222
p.P255S
ACH-001982
Metastasis
CCLE
VETTS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with HSPG2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VETTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P98160
Basement membrane-specific heparan sulfate proteoglycan core protein
DEG_SPOP_SBC_1
249:253
VETTS
SPOP
0.9944
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
151:155
VETTS
SPOP
0.9829
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
9523:9527
VETTS
SPOP
0.6786
More...
Q96RL1
BRCA1-A complex subunit RAP80
DEG_SPOP_SBC_1
22:26
VETTS
SPOP
0.9963
More...
Q9HCK1
DBF4-type zinc finger-containing protein 2
DEG_SPOP_SBC_1
244:248
VETTS
SPOP
0.995
More...