DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VGIFLD
Uniprot ID:
O75679
Source protein:
Ret finger protein-like 3
Source gene:
RFPL3
Class:
LIG_APCC_ABBA_1
Location:
245:250
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5402
ASA_SCORE:
10.7833
COIL:
0.0212
CONS_SCORE:
0.9244
DSS_SCORE:
0.0386
HELIX:
0.0028
FCONS_SCORE:
1.4463
RIG_SCORE:
0.9241
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F248Y
TCGA-55-A490
LUAD
TCGA
VGIFLD
LIG_APCC_ABBA_1
0.6417
p.R240H
TCGA-A5-A0G2
UCEC
TCGA
VGIFLD
LIG_APCC_ABBA_1
0.1944
p.R240H
TCGA-AX-A1CE
UCEC
TCGA
VGIFLD
LIG_APCC_ABBA_1
0.1944
p.R240H
SIDM02059
Colorectal Carcinoma
GDSC
VGIFLD
LIG_APCC_ABBA_1
0.1944
p.R240H
SIDM02013
Colorectal Carcinoma
GDSC
VGIFLD
LIG_APCC_ABBA_1
0.1944
p.R240H
SIDM00720
Mesothelioma
GDSC
VGIFLD
LIG_APCC_ABBA_1
0.1944
p.R240H
ACH-000648
Lung Cancer
CCLE
VGIFLD
LIG_APCC_ABBA_1
0.1944
p.R240H
NCI-H28
pleura
COSMIC
VGIFLD
LIG_APCC_ABBA_1
0.1944
p.V245L
TCGA-D1-A17Q
UCEC
TCGA
VGIFLD
LIG_APCC_ABBA_1
0.5654
p.G246E
TCGA-D9-A1JW
SKCM
TCGA
VGIFLD
LIG_APCC_ABBA_1
0.6087
p.R251H
DO7855
COAD
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.3056
p.R251H
DO41799
UCEC
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.3056
p.R251C
DO222733
COCA
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.3056
p.R251C
DO222813
COCA
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.3056
p.R251C
DO225404
LAML
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.3056
p.R251C
DO51022
LAML
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.3056
p.R251C
DO228941
LICA
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.3056
p.R251C
DO32980
PACA
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.3056
p.R251C
DO229472
PRAD
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.3056
p.L250Q
DO25787
LUAD
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.7765
p.S243R
DO45346
LUAD
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.2778
p.P256H
DO42193
UCEC
ICGC
VGIFLD
LIG_APCC_ABBA_1
0.1667
p.V245A
SIDM00451
T-Lymphoblastic Leukemia
GDSC
VGIFLD
LIG_APCC_ABBA_1
0.6936
p.V245A
ACH-000937
Leukemia
CCLE
VGIFLD
LIG_APCC_ABBA_1
0.6936
p.V245A
PF-382
haematopoietic_and_lymphoid_tissue
COSMIC
VGIFLD
LIG_APCC_ABBA_1
0.6936
p.L237F
SIDM00959
Acute Myeloid Leukemia
GDSC
VGIFLD
LIG_APCC_ABBA_1
0.1111
p.F241C
ACH-002256
Leukemia
CCLE
VGIFLD
LIG_APCC_ABBA_1
0.3333
p.F241C
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
VGIFLD
LIG_APCC_ABBA_1
0.3333
Drug responses associated with RFPL3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VGIFLD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00478
Butyrophilin subfamily 3 member A3
LIG_APCC_ABBA_1
461:466
VGIFLD
APC,CDC20,FZR1
0.5632
More...
O75677
Ret finger protein-like 1
LIG_APCC_ABBA_1
245:250
VGIFLD
APC,CDC20,FZR1
0.6529
More...
O75679
Ret finger protein-like 3
LIG_APCC_ABBA_1
245:250
VGIFLD
APC,CDC20,FZR1
0.5402
More...
Q9HCM9
E3 ubiquitin-protein ligase TRIM39
LIG_APCC_ABBA_1
458:463
VGIFLD
APC,CDC20,FZR1
0.6444
More...
O75678
Ret finger protein-like 2
LIG_APCC_ABBA_1
306:311
VGIFLD
APC,CDC20,FZR1
0.6529
More...