DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VNTTT
Uniprot ID:
Q9H6D8
Source protein:
Fibronectin type III domain-containing protein 4
Source gene:
FNDC4
Class:
DEG_SPOP_SBC_1
Location:
96:100
E3 ligase:
SPOP
DEGRON score:
0.7213
ASA_SCORE:
71.14
COIL:
0.707
CONS_SCORE:
0.9403
DSS_SCORE:
0.2748
HELIX:
0.0286
FCONS_SCORE:
1.0985
RIG_SCORE:
0.8551
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.W106C
TCGA-CK-6746
COAD
TCGA
VNTTT
DEG_SPOP_SBC_1
0.1667
p.W106C
DO7938
COAD
ICGC
VNTTT
DEG_SPOP_SBC_1
0.1667
p.G89E
DO229257
THCA
ICGC
VNTTT
DEG_SPOP_SBC_1
0.1389
p.R91H
SIDM00990
Non-Small Cell Lung Carcinoma
GDSC
VNTTT
DEG_SPOP_SBC_1
0.1944
p.R91H
ACH-000603
Lung Cancer
CCLE
VNTTT
DEG_SPOP_SBC_1
0.1944
p.R91H
BEN
lung
COSMIC
VNTTT
DEG_SPOP_SBC_1
0.1944
p.R101P
SIDM00166
Other Solid Cancers
GDSC
VNTTT
DEG_SPOP_SBC_1
0.3056
p.R101P
ACH-000302
Endometrial/Uterine Cancer
CCLE
VNTTT
DEG_SPOP_SBC_1
0.3056
p.R94W
SIDM01619
Endometrial Carcinoma
GDSC
VNTTT
DEG_SPOP_SBC_1
0.2778
p.R94W
ACH-000984
Endometrial/Uterine Cancer
CCLE
VNTTT
DEG_SPOP_SBC_1
0.2778
Drug responses associated with FNDC4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60861
Growth arrest-specific protein 7
DEG_SPOP_SBC_1
96:100
VNTTT
SPOP
0.5222
More...
O60934
Nibrin
DEG_SPOP_SBC_1
358:362
VNTTT
SPOP
0.9805
More...
Q9HAZ2
Histone-lysine N-methyltransferase PRDM16
DEG_SPOP_SBC_1
607:611
VNTTT
SPOP
0.9305
More...
Q9H6D8
Fibronectin type III domain-containing protein 4
DEG_SPOP_SBC_1
96:100
VNTTT
SPOP
0.7213
More...
Q3C1V0
Membrane-spanning 4-domains subfamily A member 18
DEG_SPOP_SBC_1
335:339
VNTTT
SPOP
0.9964
More...
Q3C1V0
Membrane-spanning 4-domains subfamily A member 18
DEG_SPOP_SBC_1
342:346
VNTTT
SPOP
0.9552
More...
Q3C1V0
Membrane-spanning 4-domains subfamily A member 18
DEG_SPOP_SBC_1
370:374
VNTTT
SPOP
0.856
More...