DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VNTTT
Uniprot ID:
Q9HAZ2
Source protein:
Histone-lysine N-methyltransferase PRDM16
Source gene:
PRDM16
Class:
DEG_SPOP_SBC_1
Location:
607:611
E3 ligase:
SPOP
DEGRON score:
0.9305
ASA_SCORE:
82.1
COIL:
0.801
CONS_SCORE:
0.4949
DSS_SCORE:
0.5364
HELIX:
0.0524
FCONS_SCORE:
1.0472
RIG_SCORE:
0.702
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G601C
TCGA-17-Z056
LUAD
TCGA
VNTTT
DEG_SPOP_SBC_1
0.1667
p.D616Y
TCGA-86-8279
LUAD
TCGA
VNTTT
DEG_SPOP_SBC_1
0.1944
p.T618A
TCGA-A6-6653
COAD
TCGA
VNTTT
DEG_SPOP_SBC_1
0.1389
p.D597N
TCGA-BR-8487
STAD
TCGA
VNTTT
DEG_SPOP_SBC_1
0.0556
p.D614N
TCGA-FR-A7U9
SKCM
TCGA
VNTTT
DEG_SPOP_SBC_1
0.25
p.S597T
DO222404
BTCA
ICGC
VNTTT
DEG_SPOP_SBC_1
0.0556
p.T619A
DO10373
COAD
ICGC
VNTTT
DEG_SPOP_SBC_1
0.1111
p.S600L
DO50346
ESAD
ICGC
VNTTT
DEG_SPOP_SBC_1
0.1389
p.D617Y
DO24140
LUAD
ICGC
VNTTT
DEG_SPOP_SBC_1
0.1667
p.D615N
DO48546
SKCM
ICGC
VNTTT
DEG_SPOP_SBC_1
0.2222
p.D598N
DO47867
STAD
ICGC
VNTTT
DEG_SPOP_SBC_1
0.0833
p.T621M
SIDM01960
Colorectal Carcinoma
GDSC
VNTTT
DEG_SPOP_SBC_1
0.0556
p.T621M
ACH-001111
Lymphoma
CCLE
VNTTT
DEG_SPOP_SBC_1
0.0556
p.V607A
SIDM00188
Kidney Carcinoma
GDSC
VNTTT
DEG_SPOP_SBC_1
0.5825
p.V607A
SIDM01711
Non-Cancerous
GDSC
VNTTT
DEG_SPOP_SBC_1
0.5825
p.V607A
ACH-002350
Non-Cancerous
CCLE
VNTTT
DEG_SPOP_SBC_1
0.5825
Drug responses associated with PRDM16 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60861
Growth arrest-specific protein 7
DEG_SPOP_SBC_1
96:100
VNTTT
SPOP
0.5222
More...
O60934
Nibrin
DEG_SPOP_SBC_1
358:362
VNTTT
SPOP
0.9805
More...
Q9HAZ2
Histone-lysine N-methyltransferase PRDM16
DEG_SPOP_SBC_1
607:611
VNTTT
SPOP
0.9305
More...
Q9H6D8
Fibronectin type III domain-containing protein 4
DEG_SPOP_SBC_1
96:100
VNTTT
SPOP
0.7213
More...
Q3C1V0
Membrane-spanning 4-domains subfamily A member 18
DEG_SPOP_SBC_1
335:339
VNTTT
SPOP
0.9964
More...
Q3C1V0
Membrane-spanning 4-domains subfamily A member 18
DEG_SPOP_SBC_1
342:346
VNTTT
SPOP
0.9552
More...
Q3C1V0
Membrane-spanning 4-domains subfamily A member 18
DEG_SPOP_SBC_1
370:374
VNTTT
SPOP
0.856
More...