Gene: Gldc

Basic information

Tag Content
Uniprot ID A0A0G2JUZ5
Entrez ID
Genbank protein ID
Genbank nucleotide ID
Ensembl protein ID ENSRNOP00000069291
Ensembl nucleotide ID ENSRNOG00000011599
Gene name Glycine cleavage system P protein
Gene symbol Gldc
Organism Rattus norvegicus
NCBI taxa ID 10116
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description The glycine cleavage system catalyzes the degradation of glycine.
Sequence
MLQALGLASI DELIEKTVPA SIRLKRPLKL EDPVCENEIL ETLHAIASKN QIWRSYIGMG 60
YYNCSVPQTI LRNLLENSGW VTQYTPYQPE VSQGRLESLL NYQTMVSDIT GLDMANASLL 120
DEATAAAEAM QLCHRHNKRK RFFIDPRCHP QTIAVVQTRA KYRGVIVELK LPHEMDFSGK 180
DVSGVLFQYP DTEGKVEDFT ELVERAHQTG SLTCCATDLL ALCILRPPGE FGVDIALGNS 240
QRFGVPLGYG GPHAAFFAVR ESLVRMMPGR MVGVTRDATG KEVYRLALQT REQHIRRDKA 300
TSNICTAQAL LANMAAMFAI YHGSHGLQHI AKRVHNATLI LSEGLKRAGH QLQHDLFFDT 360
LKVQCGCSLK EVLGRAAQRQ INFRLFDDGT LGISLDETVT EKDLDDLLWI FGCESSTELV 420
AEGMGEEWRG LLGSSFKRTS PFLTHQVFNS YHSETNLVRY MKKLENKDIS LVHSMIPLGS 480
CTMKLNSSSE LTPITWREFA NIHPFVPLDQ AQGYQQLFQE LEKDLCELTG YDRVSFQPNS 540
GAQGEYAGLA TIRAYLDQKG ERHRTVCLIP KSAHGTNPAS AYMAGMKIQP VEVDRYGNID 600
VAHLKAMVDK HKENLAAIMI TYPSTNGVFE ENISDVCALI HQHGGQVYLD GANMNAQVGI 660
CRPGDFGSDV SHLNLHKTFC IPHGGGGPGM GPIGVKKHLV PFLPSHPIVC LKPNEDTWPV 720
GTVSAAPWGS SSILPISWAY IKMMGGKGLK EATEIAILNA NYMAKRLERY YRVLFRGARG 780
YVAHEFILDT RPFKKSANIE AVDVAKRLQD YGFHAPTMSW PVAGTLMIEP TESEDKAELD 840
RFCDAMISIR QEIADIEEGR IDPRVNPLKM SPHSLTCVTS SRWDRPYSRE VAAFPLPFVK 900
PENKFWPTIA RIDDIYGDQH LVCTCPPMEV YESPFSEQKR ASS 943

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologGLDC507688E1BJQ1Bos taurusPredictionMore>>
1:1 orthologGLDC481534A0A5F4C8B1Canis lupus familiarisPredictionMore>>
1:1 orthologGLDC102174205A0A452FM63Capra hircusPredictionMore>>
1:1 orthologGLDC2731P23378Homo sapiensPredictionMore>>
1:1 orthologGldc104174Q91W43CPOMus musculusPublicationMore>>
1:1 orthologGLDCA0A2I3RPM1Pan troglodytesPredictionMore>>
1:1 orthologA0A480TLS3Sus scrofaPredictionMore>>
1:1 orthologGLDC100343694G1SL36Oryctolagus cuniculusPredictionMore>>
1:1 orthologGldcA0A0G2JUZ5Rattus norvegicusPredictionMore>>
1:1 orthologgldcA0A0G2KSN1Danio rerioPredictionMore>>

Gene ontology

GO ID GO Term
GO:0005960 glycine cleavage complex
GO:0005739 mitochondrion
GO:0005654 nucleoplasm
GO:0005886 plasma membrane
GO:0019899 enzyme binding
GO:0016594 glycine binding
GO:0004375 glycine dehydrogenase (decarboxylating) activity
GO:0016829 lyase activity
GO:0030170 pyridoxal phosphate binding
GO:1990830 cellular response to leukemia inhibitory factor
GO:0006546 glycine catabolic process
GO:0019464 glycine decarboxylation via glycine cleavage system
GO:0065003 protein-containing complex assembly

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0496 Mitochondrion
KW-0560 Oxidoreductase
KW-1267 Proteomics identification
KW-0663 Pyridoxal phosphate
KW-1185 Reference proteome
KW-0809 Transit peptide

Interpro

InterPro ID InterPro Term
IPR001597 ArAA_b-elim_lyase/Thr_aldolase
IPR003437 GcvP
IPR020581 GDC_P
IPR015424 PyrdxlP-dep_Trfase
IPR015422 PyrdxlP-dep_Trfase_dom1
IPR015421 PyrdxlP-dep_Trfase_major

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF01212 Beta_elim_lyase
PF02347 GDC-P