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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: MTPN

Summary

GeneID

136319

Symbol

MTPN

Synonyms

FLJ31098|FLJ99857|GCDP|V-1

Description

myotrophin

Locus tag

Gene type

protein-coding

Map location

7q33

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

NAS

12031792

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0030182

neuron differentiation

NAS

neuron (GO term level: 8)

12031792

GO:0006417

regulation of translation

NAS

12031792

GO:0016049

cell growth

NAS

12031792

GO:0016202

regulation of striated muscle development

NAS

12031792

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005575

cellular_component

GO:0005622

intracellular

IDA

11256614

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
NFKB1	DKFZp686C01211 \| EBP-1 \| KBF1 \| MGC54151 \| NF-kappa-B \| NFKB-p105 \| NFKB-p50 \| p105	nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	-	HPRD,BioGRID	11971907
REL	C-Rel	v-rel reticuloendotheliosis viral oncogene homolog (avian)	Affinity Capture-Western Reconstituted Complex	BioGRID	11971907
RELA	MGC131774 \| NFKB3 \| p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	Affinity Capture-Western Reconstituted Complex	BioGRID	11971907
RIPK5	DustyPK \| HDCMD38P \| KIAA0472 \| RIP5	receptor interacting protein kinase 5	Affinity Capture-MS	BioGRID	17353931

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
RASHI_RESPONSE_TO_IONIZING_RADIATION_4	61	34	All SZGR genes in this pathway
PASQUALUCCI_LYMPHOMA_BY_GC_STAGE_DN	165	104	All SZGR genes in this pathway
NOUZOVA_TRETINOIN_AND_H4_ACETYLATION	143	85	All SZGR genes in this pathway
DOUGLAS_BMI1_TARGETS_UP	566	371	All SZGR genes in this pathway
ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_UP	174	96	All SZGR genes in this pathway
ACEVEDO_LIVER_CANCER_UP	973	570	All SZGR genes in this pathway
QI_PLASMACYTOMA_UP	259	185	All SZGR genes in this pathway
CHEN_METABOLIC_SYNDROM_NETWORK	1210	725	All SZGR genes in this pathway
MILI_PSEUDOPODIA_CHEMOTAXIS_UP	74	45	All SZGR genes in this pathway
MILI_PSEUDOPODIA_HAPTOTAXIS_UP	518	299	All SZGR genes in this pathway
DANG_BOUND_BY_MYC	1103	714	All SZGR genes in this pathway
WHITFIELD_CELL_CYCLE_M_G1	148	95	All SZGR genes in this pathway
LU_EZH2_TARGETS_DN	414	237	All SZGR genes in this pathway
GABRIELY_MIR21_TARGETS	289	187	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_3_DN	918	550	All SZGR genes in this pathway
PASINI_SUZ12_TARGETS_DN	315	215	All SZGR genes in this pathway
FEVR_CTNNB1_TARGETS_UP	682	433	All SZGR genes in this pathway
FORTSCHEGGER_PHF8_TARGETS_DN	784	464	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	1410	1416	1A	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-1/206	720	726	1A	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-124.1	460	467	1A,m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	460	466	1A	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	460	466	1A	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-135	828	834	1A	hsa-miR-135a	UAUGGCUUUUUAUUCCUAUGUGA
miR-135	828	834	1A	hsa-miR-135b	UAUGGCUUUUCAUUCCUAUGUG
miR-136	2948	2955	1A,m8	hsa-miR-136	ACUCCAUUUGUUUUGAUGAUGGA
miR-137	439	445	m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-137	439	445	m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-141/200a	2893	2899	m8	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
miR-141/200a	2893	2899	m8	hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-143	2439	2445	1A	hsa-miR-143^brain	UGAGAUGAAGCACUGUAGCUCA
miR-144	3107	3113	m8	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-181	1404	1411	1A,m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-186	944	950	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-217	2132	2139	1A,m8	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-219	1719	1725	1A	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-223	666	672	m8	hsa-miR-223	UGUCAGUUUGUCAAAUACCCC
miR-26	3150	3156	1A	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	3150	3156	1A	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-330	2996	3002	m8	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-338	601	607	1A	hsa-miR-338^brain	UCCAGCAUCAGUGAUUUUGUUGA
miR-375	3135	3141	1A	hsa-miR-375	UUUGUUCGUUCGGCUCGCGUGA
miR-381	2829	2835	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-410	762	768	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-493-5p	3085	3091	m8	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-539	3063	3069	1A	hsa-miR-539	GGAGAAAUUAUCCUUGGUGUGU
miR-542-3p	67	73	m8	hsa-miR-542-3p	UGUGACAGAUUGAUAACUGAAA
miR-9	996	1002	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.