Summary ?
GeneID4843
SymbolNOS2
SynonymsHEP-NOS|INOS|NOS|NOS2A
Descriptionnitric oxide synthase 2
ReferenceMIM:163730|HGNC:HGNC:7873|Ensembl:ENSG00000007171|HPRD:01225|Vega:OTTHUMG00000132445
Gene typeprotein-coding
Map location17q11.2
Pascal p-value0.697
Fetal beta-1.748
eGeneAnterior cingulate cortex BA24
Caudate basal ganglia
Cerebellar Hemisphere
Cerebellum
Hippocampus
Hypothalamus
Nucleus accumbens basal ganglia
Putamen basal ganglia
Myers' cis & trans
SupportCompositeSet

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:GWASdbGenome-wide Association StudiesGWASdb records for schizophrenia
CV:PGCnpGenome-wide Association StudyGWAS
DNM:Fromer_2014Whole Exome Sequencing analysisThis study reported a WES study of 623 schizophrenia trios, reporting DNMs using genomic DNA.
PMID:cooccurHigh-throughput literature-searchSystematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included.
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: schizophrenia,schizophrenic,schizophrenics,schizophreniasClick to show details

Section I. Genetics and epigenetics annotation

@DNM table

GeneChromosomePositionRefAltTranscriptAA changeMutation typeSiftCG46TraitStudy
NOS2chr1726097997CTNM_000625p.584R>QmissenseSchizophreniaDNM:Fromer_2014

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs17027208chr331219519NOS248430.11trans
rs1480958chr15100575654NOS248430.1trans
rs2727185chr15100576786NOS248430.12trans
rs47961721726198381NOS2ENSG00000007171.121.246E-60.02-70856gtex_brain_ba24
rs37519721726206414NOS2ENSG00000007171.124.393E-60.02-78889gtex_brain_ba24
rs72204201726216397NOS2ENSG00000007171.123.979E-60.02-88872gtex_brain_ba24
rs80783611726230480NOS2ENSG00000007171.121.695E-60.02-102955gtex_brain_ba24
rs72129261726235226NOS2ENSG00000007171.124.666E-60.02-107701gtex_brain_ba24
rs72183951726241477NOS2ENSG00000007171.124.466E-60.02-113952gtex_brain_ba24
rs116576991726242726NOS2ENSG00000007171.121.755E-60.02-115201gtex_brain_ba24
rs116574201726245037NOS2ENSG00000007171.124.484E-60.02-117512gtex_brain_ba24
rs11575021726250109NOS2ENSG00000007171.121.695E-60.02-122584gtex_brain_ba24
rs96464341726251158NOS2ENSG00000007171.121.713E-60.02-123633gtex_brain_ba24
rs80824671726253468NOS2ENSG00000007171.121.902E-60.02-125943gtex_brain_ba24
rs25318611726136583NOS2ENSG00000007171.121.281E-60-9058gtex_brain_putamen_basal
rs25318621726136991NOS2ENSG00000007171.121.317E-60-9466gtex_brain_putamen_basal
rs27792531726137250NOS2ENSG00000007171.121.216E-60-9725gtex_brain_putamen_basal
rs27792541726137374NOS2ENSG00000007171.121.386E-60-9849gtex_brain_putamen_basal
rs27792551726137540NOS2ENSG00000007171.121.262E-60-10015gtex_brain_putamen_basal
rs25318631726137550NOS2ENSG00000007171.121.265E-60-10025gtex_brain_putamen_basal
rs25318641726138052NOS2ENSG00000007171.121.346E-60-10527gtex_brain_putamen_basal
rs18890221726138356NOS2ENSG00000007171.121.346E-60-10831gtex_brain_putamen_basal
rs108531811726139618NOS2ENSG00000007171.121.524E-60-12093gtex_brain_putamen_basal
rs25318661726143164NOS2ENSG00000007171.121.524E-60-15639gtex_brain_putamen_basal
rs25318681726143856NOS2ENSG00000007171.121.523E-60-16331gtex_brain_putamen_basal
rs27792571726144086NOS2ENSG00000007171.121.523E-60-16561gtex_brain_putamen_basal
rs25318701726145379NOS2ENSG00000007171.121.528E-60-17854gtex_brain_putamen_basal
rs25318711726145437NOS2ENSG00000007171.121.528E-60-17912gtex_brain_putamen_basal
rs25318721726147252NOS2ENSG00000007171.121.649E-60-19727gtex_brain_putamen_basal
rs27792581726147264NOS2ENSG00000007171.127.77E-70-19739gtex_brain_putamen_basal
rs25318731726147772NOS2ENSG00000007171.121.649E-60-20247gtex_brain_putamen_basal
rs25318741726147797NOS2ENSG00000007171.121.649E-60-20272gtex_brain_putamen_basal
rs25318751726148167NOS2ENSG00000007171.121.456E-60-20642gtex_brain_putamen_basal
rs27792591726148284NOS2ENSG00000007171.121.654E-60-20759gtex_brain_putamen_basal
rs25318761726149184NOS2ENSG00000007171.121.649E-60-21659gtex_brain_putamen_basal
rs27792601726149327NOS2ENSG00000007171.121.649E-60-21802gtex_brain_putamen_basal
rs25318771726149673NOS2ENSG00000007171.127.778E-70-22148gtex_brain_putamen_basal
rs25318781726150282NOS2ENSG00000007171.126.731E-70-22757gtex_brain_putamen_basal
rs25318791726150988NOS2ENSG00000007171.121.379E-60-23463gtex_brain_putamen_basal
rs25318801726151021NOS2ENSG00000007171.124.969E-70-23496gtex_brain_putamen_basal
rs27792611726151125NOS2ENSG00000007171.122.514E-60-23600gtex_brain_putamen_basal
rs25318811726153448NOS2ENSG00000007171.121.326E-60-25923gtex_brain_putamen_basal
rs27792621726154344NOS2ENSG00000007171.121.504E-60-26819gtex_brain_putamen_basal
rs25318831726154725NOS2ENSG00000007171.121.318E-60-27200gtex_brain_putamen_basal
rs27792631726155427NOS2ENSG00000007171.127.288E-70-27902gtex_brain_putamen_basal
rs25318861726159197NOS2ENSG00000007171.121.505E-60-31672gtex_brain_putamen_basal
rs25318871726159282NOS2ENSG00000007171.121.142E-60-31757gtex_brain_putamen_basal
rs27792731726159786NOS2ENSG00000007171.121.437E-60-32261gtex_brain_putamen_basal
rs27792721726161671NOS2ENSG00000007171.121.312E-60-34146gtex_brain_putamen_basal
rs27792711726162015NOS2ENSG00000007171.121.333E-60-34490gtex_brain_putamen_basal
rs27792701726162514NOS2ENSG00000007171.121.294E-60-34989gtex_brain_putamen_basal
rs27792691726164000NOS2ENSG00000007171.121.337E-60-36475gtex_brain_putamen_basal
rs27792681726164062NOS2ENSG00000007171.121.336E-60-36537gtex_brain_putamen_basal
rs27792671726164494NOS2ENSG00000007171.121.514E-60-36969gtex_brain_putamen_basal
rs40637491726165145NOS2ENSG00000007171.121.514E-60-37620gtex_brain_putamen_basal
rs1394341291726166971NOS2ENSG00000007171.121.883E-60-39446gtex_brain_putamen_basal
rs27792771726170231NOS2ENSG00000007171.121.52E-60-42706gtex_brain_putamen_basal
rs27792781726170375NOS2ENSG00000007171.121.341E-60-42850gtex_brain_putamen_basal
rs343504881726171281NOS2ENSG00000007171.121.35E-60-43756gtex_brain_putamen_basal
rs40637461726171381NOS2ENSG00000007171.121.343E-60-43856gtex_brain_putamen_basal
rs25318921726173599NOS2ENSG00000007171.121.342E-60-46074gtex_brain_putamen_basal
rs25318931726173682NOS2ENSG00000007171.121.448E-60-46157gtex_brain_putamen_basal
rs25318941726173945NOS2ENSG00000007171.127.251E-70-46420gtex_brain_putamen_basal
rs25318961726174102NOS2ENSG00000007171.121.3E-60-46577gtex_brain_putamen_basal
rs20797151726177102NOS2ENSG00000007171.121.527E-80-49577gtex_brain_putamen_basal
rs93036981726178169NOS2ENSG00000007171.121.674E-80-50644gtex_brain_putamen_basal
rs65055101726179790NOS2ENSG00000007171.123.438E-90-52265gtex_brain_putamen_basal
rs99039441726180739NOS2ENSG00000007171.127.822E-90-53214gtex_brain_putamen_basal
rs21089521726181865NOS2ENSG00000007171.122.271E-100-54340gtex_brain_putamen_basal
rs113902081726184545NOS2ENSG00000007171.122.264E-100-57020gtex_brain_putamen_basal
rs339434131726184546NOS2ENSG00000007171.121.197E-100-57021gtex_brain_putamen_basal
rs72115921726185418NOS2ENSG00000007171.122.278E-100-57893gtex_brain_putamen_basal
rs47961471726186288NOS2ENSG00000007171.121.656E-100-58763gtex_brain_putamen_basal
rs98950041726187085NOS2ENSG00000007171.122.697E-90-59560gtex_brain_putamen_basal
rs9869931726187576NOS2ENSG00000007171.121.698E-100-60051gtex_brain_putamen_basal
rs96748831726188121NOS2ENSG00000007171.121.83E-90-60596gtex_brain_putamen_basal
rs285107541726190828NOS2ENSG00000007171.122.767E-100-63303gtex_brain_putamen_basal
rs65055231726192713NOS2ENSG00000007171.126.552E-90-65188gtex_brain_putamen_basal
rs72204731726194116NOS2ENSG00000007171.125.509E-100-66591gtex_brain_putamen_basal
rs99098871726195341NOS2ENSG00000007171.127.903E-100-67816gtex_brain_putamen_basal
rs124508171726196802NOS2ENSG00000007171.126.206E-100-69277gtex_brain_putamen_basal
rs65055241726197769NOS2ENSG00000007171.124.428E-100-70244gtex_brain_putamen_basal
rs47961721726198381NOS2ENSG00000007171.122.625E-90-70856gtex_brain_putamen_basal
rs129364161726202050NOS2ENSG00000007171.121.645E-100-74525gtex_brain_putamen_basal
rs19863111726204098NOS2ENSG00000007171.123.523E-90-76573gtex_brain_putamen_basal
rs37519721726206414NOS2ENSG00000007171.125.711E-100-78889gtex_brain_putamen_basal
rs72204201726216397NOS2ENSG00000007171.123.314E-90-88872gtex_brain_putamen_basal
rs47962221726216786NOS2ENSG00000007171.123.864E-90-89261gtex_brain_putamen_basal
rs20797141726222520NOS2ENSG00000007171.121.909E-90-94995gtex_brain_putamen_basal
rs572490091726222886NOS2ENSG00000007171.121.548E-90-95361gtex_brain_putamen_basal
rs10348951726225558NOS2ENSG00000007171.127.233E-70-98033gtex_brain_putamen_basal
rs80783611726230480NOS2ENSG00000007171.121.933E-60-102955gtex_brain_putamen_basal
rs21910581726232917NOS2ENSG00000007171.122.369E-90-105392gtex_brain_putamen_basal
rs3978264601726235633NOS2ENSG00000007171.129.594E-80-108108gtex_brain_putamen_basal
rs47951421726240411NOS2ENSG00000007171.125.725E-90-112886gtex_brain_putamen_basal
rs116576991726242726NOS2ENSG00000007171.124.986E-70-115201gtex_brain_putamen_basal
rs96307401726242756NOS2ENSG00000007171.125.952E-90-115231gtex_brain_putamen_basal
rs11575021726250109NOS2ENSG00000007171.121.648E-60-122584gtex_brain_putamen_basal
rs110803801726250721NOS2ENSG00000007171.123.68E-70-123196gtex_brain_putamen_basal
rs96464341726251158NOS2ENSG00000007171.121.647E-60-123633gtex_brain_putamen_basal
rs116576131726252856NOS2ENSG00000007171.125.953E-90-125331gtex_brain_putamen_basal
rs80824671726253468NOS2ENSG00000007171.121.681E-60-125943gtex_brain_putamen_basal
rs354100591726258447NOS2ENSG00000007171.125.563E-80-130922gtex_brain_putamen_basal
rs356527261726259792NOS2ENSG00000007171.124.139E-70-132267gtex_brain_putamen_basal
rs558204041726261503NOS2ENSG00000007171.121.458E-70-133978gtex_brain_putamen_basal
rs169667241726262851NOS2ENSG00000007171.121.187E-60-135326gtex_brain_putamen_basal
rs351067581726263783NOS2ENSG00000007171.122.781E-60-136258gtex_brain_putamen_basal
rs343718061726264057NOS2ENSG00000007171.123.468E-60-136532gtex_brain_putamen_basal
rs341603501726264319NOS2ENSG00000007171.123.473E-60-136794gtex_brain_putamen_basal
rs129518951726264497NOS2ENSG00000007171.123.473E-60-136972gtex_brain_putamen_basal
rs110800451726265269NOS2ENSG00000007171.125.199E-60-137744gtex_brain_putamen_basal
rs713723551726265885NOS2ENSG00000007171.128.661E-70-138360gtex_brain_putamen_basal
rs120517301726266230NOS2ENSG00000007171.123.473E-60-138705gtex_brain_putamen_basal
rs80674281726267997NOS2ENSG00000007171.122.512E-60-140472gtex_brain_putamen_basal
rs105124281726268925NOS2ENSG00000007171.122.488E-60-141400gtex_brain_putamen_basal
rs342560021726272308NOS2ENSG00000007171.124.033E-70-144783gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
KEGG ARGININE AND PROLINE METABOLISM 5439All SZGR 2.0 genes in this pathway
KEGG CALCIUM SIGNALING PATHWAY 178134All SZGR 2.0 genes in this pathway
KEGG PEROXISOME 7847All SZGR 2.0 genes in this pathway
KEGG LEISHMANIA INFECTION 7256All SZGR 2.0 genes in this pathway
KEGG PATHWAYS IN CANCER 328259All SZGR 2.0 genes in this pathway
KEGG SMALL CELL LUNG CANCER 8467All SZGR 2.0 genes in this pathway
BIOCARTA PPARA PATHWAY 5843All SZGR 2.0 genes in this pathway
BIOCARTA NO2IL12 PATHWAY 1714All SZGR 2.0 genes in this pathway
PID IL12 2PATHWAY 6354All SZGR 2.0 genes in this pathway
PID INTEGRIN A9B1 PATHWAY 2518All SZGR 2.0 genes in this pathway
PID ATF2 PATHWAY 5943All SZGR 2.0 genes in this pathway
PID IL23 PATHWAY 3730All SZGR 2.0 genes in this pathway
PID P38 ALPHA BETA DOWNSTREAM PATHWAY 3829All SZGR 2.0 genes in this pathway
PID HIF1 TFPATHWAY 6652All SZGR 2.0 genes in this pathway
REACTOME LATENT INFECTION OF HOMO SAPIENS WITH MYCOBACTERIUM TUBERCULOSIS 3315All SZGR 2.0 genes in this pathway
REACTOME NITRIC OXIDE STIMULATES GUANYLATE CYCLASE 2519All SZGR 2.0 genes in this pathway
REACTOME PLATELET HOMEOSTASIS 7849All SZGR 2.0 genes in this pathway
REACTOME HEMOSTASIS 466331All SZGR 2.0 genes in this pathway
LEE NEURAL CREST STEM CELL DN 11879All SZGR 2.0 genes in this pathway
GRAESSMANN APOPTOSIS BY SERUM DEPRIVATION DN 234147All SZGR 2.0 genes in this pathway
DEBOSSCHER NFKB TARGETS REPRESSED BY GLUCOCORTICOIDS 2418All SZGR 2.0 genes in this pathway
YAN ESCAPE FROM ANOIKIS 2419All SZGR 2.0 genes in this pathway
PUJANA BRCA1 PCC NETWORK 16521023All SZGR 2.0 genes in this pathway
PUJANA ATM PCC NETWORK 1442892All SZGR 2.0 genes in this pathway
SHIN B CELL LYMPHOMA CLUSTER 1 1311All SZGR 2.0 genes in this pathway
TARTE PLASMA CELL VS PLASMABLAST UP 398262All SZGR 2.0 genes in this pathway
PETROVA ENDOTHELIUM LYMPHATIC VS BLOOD UP 13187All SZGR 2.0 genes in this pathway
KAYO CALORIE RESTRICTION MUSCLE DN 8759All SZGR 2.0 genes in this pathway
RAMASWAMY METASTASIS DN 6147All SZGR 2.0 genes in this pathway
LEE AGING CEREBELLUM DN 8666All SZGR 2.0 genes in this pathway
SEMENZA HIF1 TARGETS 3632All SZGR 2.0 genes in this pathway
WELCSH BRCA1 TARGETS DN 14192All SZGR 2.0 genes in this pathway
FOSTER TOLERANT MACROPHAGE DN 409268All SZGR 2.0 genes in this pathway
WINTER HYPOXIA METAGENE 242168All SZGR 2.0 genes in this pathway
MIZUKAMI HYPOXIA UP 1212All SZGR 2.0 genes in this pathway
YOSHIMURA MAPK8 TARGETS UP 1305895All SZGR 2.0 genes in this pathway
HOSHIDA LIVER CANCER SURVIVAL UP 7349All SZGR 2.0 genes in this pathway
VERHAAK GLIOBLASTOMA CLASSICAL 162122All SZGR 2.0 genes in this pathway
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY 1839928All SZGR 2.0 genes in this pathway
ZWANG EGF INTERVAL DN 214124All SZGR 2.0 genes in this pathway