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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: CTNNBIP1

Summary

GeneID

56998

Symbol

CTNNBIP1

Synonyms

ICAT|MGC15093

Description

catenin, beta interacting protein 1

Locus tag

Gene type

protein-coding

Map location

1p36.22

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0069

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0008013

beta-catenin binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000122

negative regulation of transcription from RNA polymerase II promoter

IEA

GO:0006355

regulation of transcription, DNA-dependent

TAS

10898789

GO:0009952

anterior/posterior pattern formation

IEA

GO:0007165

signal transduction

TAS

10898789

GO:0008283

cell proliferation

TAS

10898789

GO:0007275

multicellular organismal development

TAS

10898789

GO:0030178

negative regulation of Wnt receptor signaling pathway

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005737

cytoplasm

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
BEND5	C1orf165 \| FLJ11588	BEN domain containing 5	Two-hybrid	BioGRID	16189514
CASP4	ICE(rel)II \| ICEREL-II \| ICH-2 \| Mih1/TX \| TX	caspase 4, apoptosis-related cysteine peptidase	Affinity Capture-MS	BioGRID	17353931
CPVL	HVLP \| MGC10029	carboxypeptidase, vitellogenic-like	Affinity Capture-MS	BioGRID	17353931
CTNNB1	CTNNB \| DKFZp686D02253 \| FLJ25606 \| FLJ37923	catenin (cadherin-associated protein), beta 1, 88kDa	-	HPRD,BioGRID	10898789
CTSA	GLB2 \| GSL \| NGBE \| PPCA \| PPGB	cathepsin A	Affinity Capture-MS	BioGRID	17353931
GLB1	EBP \| ELNR1	galactosidase, beta 1	Affinity Capture-MS	BioGRID	17353931
GOT2	FLJ40994 \| KAT4 \| KATIV \| mitAAT	glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)	Affinity Capture-MS	BioGRID	17353931
JUP	ARVD12 \| CTNNG \| DP3 \| DPIII \| PDGB \| PKGB	junction plakoglobin	Affinity Capture-MS Two-hybrid	BioGRID	16189514 \|17353931
NACAP1	FKSG17	nascent-polypeptide-associated complex alpha polypeptide pseudogene 1	Affinity Capture-MS	BioGRID	17353931
PNMA2	KIAA0883 \| MA2 \| MM2 \| RGAG2	paraneoplastic antigen MA2	Affinity Capture-MS	BioGRID	17353931
PPP2R1A	MGC786 \| PR65A	protein phosphatase 2 (formerly 2A), regulatory subunit A, alpha isoform	Affinity Capture-MS	BioGRID	17353931
RPA3	REPA3	replication protein A3, 14kDa	Affinity Capture-MS	BioGRID	17353931

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
KEGG_WNT_SIGNALING_PATHWAY	151	112	All SZGR genes in this pathway
WNT_SIGNALING	89	71	All SZGR genes in this pathway
PID_BETA_CATENIN_NUC_PATHWAY	80	60	All SZGR genes in this pathway
ONKEN_UVEAL_MELANOMA_DN	526	357	All SZGR genes in this pathway
JAEGER_METASTASIS_DN	258	141	All SZGR genes in this pathway
ENK_UV_RESPONSE_EPIDERMIS_DN	508	354	All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN	1781	1082	All SZGR genes in this pathway
LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN	800	473	All SZGR genes in this pathway
WANG_RESPONSE_TO_BEXAROTENE_UP	34	17	All SZGR genes in this pathway
BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN	637	377	All SZGR genes in this pathway
GEORGES_TARGETS_OF_MIR192_AND_MIR215	893	528	All SZGR genes in this pathway
BYSTRYKH_HEMATOPOIESIS_STEM_CELL_QTL_TRANS	882	572	All SZGR genes in this pathway
BAELDE_DIABETIC_NEPHROPATHY_DN	434	302	All SZGR genes in this pathway
MARTINEZ_RB1_TARGETS_DN	543	317	All SZGR genes in this pathway
MARTINEZ_TP53_TARGETS_DN	593	372	All SZGR genes in this pathway
MARTINEZ_RB1_AND_TP53_TARGETS_DN	591	366	All SZGR genes in this pathway
ZHENG_GLIOBLASTOMA_PLASTICITY_UP	250	168	All SZGR genes in this pathway
BOCHKIS_FOXA2_TARGETS	425	261	All SZGR genes in this pathway
WINNEPENNINCKX_MELANOMA_METASTASIS_DN	46	26	All SZGR genes in this pathway
KARLSSON_TGFB1_TARGETS_DN	207	139	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-10	511	517	m8	hsa-miR-10a	UACCCUGUAGAUCCGAAUUUGUG
miR-10	511	517	m8	hsa-miR-10b	UACCCUGUAGAACCGAAUUUGU
miR-145	407	414	1A,m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-192/215	362	368	m8	hsa-miR-192	CUGACCUAUGAAUUGACAGCC
miR-192/215	362	368	m8	hsa-miR-215	AUGACCUAUGAAUUGACAGAC
miR-23	379	386	1A,m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
miR-23	379	386	1A,m8	hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-25/32/92/363/367	571	577	1A	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-26	542	548	1A	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	542	548	1A	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-29	350	356	m8	hsa-miR-29a^SZ	UAGCACCAUCUGAAAUCGGUU
				hsa-miR-29b^SZ	UAGCACCAUUUGAAAUCAGUGUU
				hsa-miR-29c^SZ	UAGCACCAUUUGAAAUCGGU
miR-323	379	385	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.