Gene Page: SNRPN

Summary
GeneID  6638
Symbol  SNRPN
Synonyms  DKFZp686C0927|DKFZp686M12165|DKFZp761I1912|DKFZp762N022|FLJ33569|FLJ36996|FLJ39265|HCERN3|MGC29886|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN
Description  small nuclear ribonucleoprotein polypeptide N
See related  HGNC:11164|MIM:182279|Ensembl:ENSG00000128739|HPRD:01653|
Locus tag  -
Gene type  protein-coding
Map location  15q11.2
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
NetworkShortest path distance of core genes in the Human protein-protein interaction networkContribution to shortest path in PPI network: 0.0278 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
LIX10.690.69
TMEM470.690.69
MDFIC0.680.66
FIBIN0.670.63
SULT1C40.660.60
ABHD40.660.61
SNTB10.650.64
SLC40A10.650.59
ANXA50.650.59
ST50.640.60
Top 10 negatively co-expressed genes
AC132872.1-0.29-0.36
RP9P-0.26-0.34
IER5L-0.26-0.15
AC135724.1-0.25-0.26
AC005921.3-0.24-0.30
SNHG12-0.24-0.25
NEUROD2-0.23-0.07
FAM159B-0.23-0.27
AC010300.1-0.22-0.13
TBR1-0.22-0.08
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003674molecular_functionND-
GO:0003723RNA bindingIEA-
GO:0042802identical protein bindingIPI14715275 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0008380RNA splicingTAS1533223 
GO:0008150biological_processND-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005575cellular_componentND-
GO:0005634nucleusIEA-
GO:0005681spliceosomeTAS1533223 
GO:0030532small nuclear ribonucleoprotein complexTAS7512861 
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
ARL4DARF4L | ARL6ADP-ribosylation factor-like 4DTwo-hybridBioGRID16169070 
C1orf103FLJ11269 | RIF1 | RP11-96K19.1chromosome 1 open reading frame 103Two-hybridBioGRID16169070 
FBLFIB | FLRN | RNU3IP1fibrillarin-HPRD12244096 
GAR1NOLA1GAR1 ribonucleoprotein homolog (yeast)Reconstituted ComplexBioGRID12244096 
SH3GL3CNSA3 | EEN-2B-L3 | EEN-B2 | HsT19371 | SH3D2C | SH3P13SH3-domain GRB2-like 3Two-hybridBioGRID16169070 
SNRPD1HsT2456 | SMD1 | SNRPDsmall nuclear ribonucleoprotein D1 polypeptide 16kDaSNRPN interacts with SNRPD1.BIND9417867 
SNRPD3SMD3small nuclear ribonucleoprotein D3 polypeptide 18kDaSNRPD3 interacts with SNRPN.BIND9417867 
Two-hybridBioGRID9417867 
TP53FLJ92943 | LFS1 | TRP53 | p53tumor protein p53Two-hybridBioGRID16169070 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
LIU_SOX4_TARGETS_DN 309191All SZGR genes in this pathway
BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN 169118All SZGR genes in this pathway
THUM_SYSTOLIC_HEART_FAILURE_DN 244147All SZGR genes in this pathway
DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_DN 320184All SZGR genes in this pathway
BASAKI_YBX1_TARGETS_DN 384230All SZGR genes in this pathway
VECCHI_GASTRIC_CANCER_EARLY_DN 367220All SZGR genes in this pathway
LINDGREN_BLADDER_CANCER_CLUSTER_3_DN 229142All SZGR genes in this pathway
ABDULRAHMAN_KIDNEY_CANCER_VHL_DN 149All SZGR genes in this pathway
PEREZ_TP53_TARGETS 1174695All SZGR genes in this pathway
GRUETZMANN_PANCREATIC_CANCER_DN 203134All SZGR genes in this pathway
LIAO_METASTASIS 539324All SZGR genes in this pathway
RICKMAN_METASTASIS_UP 344180All SZGR genes in this pathway
BENPORATH_ES_1 379235All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS 988594All SZGR genes in this pathway
BENPORATH_OCT4_TARGETS 290172All SZGR genes in this pathway
BENPORATH_SOX2_TARGETS 734436All SZGR genes in this pathway
BENPORATH_NOS_TARGETS 179105All SZGR genes in this pathway
FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_UP 8767All SZGR genes in this pathway
ZHAN_MULTIPLE_MYELOMA_UP 6446All SZGR genes in this pathway
SUZUKI_RESPONSE_TO_TSA_AND_DECITABINE_1A 2316All SZGR genes in this pathway
KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN 911527All SZGR genes in this pathway
KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN 1011592All SZGR genes in this pathway
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_4 307185All SZGR genes in this pathway
LEIN_NEURON_MARKERS 6945All SZGR genes in this pathway
LEIN_LOCALIZED_TO_PROXIMAL_DENDRITES 3726All SZGR genes in this pathway
HOQUE_METHYLATED_IN_CANCER 5645All SZGR genes in this pathway
MUELLER_PLURINET 299189All SZGR genes in this pathway
BOHN_PRIMARY_IMMUNODEFICIENCY_SYNDROM_DN 4031All SZGR genes in this pathway
RAY_TARGETS_OF_P210_BCR_ABL_FUSION_DN 1611All SZGR genes in this pathway
WANG_RESPONSE_TO_GSK3_INHIBITOR_SB216763_UP 397206All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_3_DN 918550All SZGR genes in this pathway
BRIDEAU_IMPRINTED_GENES 6347All SZGR genes in this pathway
ACEVEDO_FGFR1_TARGETS_IN_PROSTATE_CANCER_MODEL_DN 308187All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_1ST_EGF_PULSE_ONLY 1839928All SZGR genes in this pathway


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